Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   ACKUB1_RS06480 Genome accession   NZ_CP176366
Coordinates   1337940..1339772 (+) Length   610 a.a.
NCBI ID   WP_109941312.1    Uniprot ID   A0A2V2N8U4
Organism   Methanospirillum stamsii strain Pt1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1332940..1344772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUB1_RS06450 (ACKUB1_06450) - 1333705..1335159 (+) 1455 WP_109941318.1 preprotein translocase subunit SecD -
  ACKUB1_RS06455 (ACKUB1_06455) - 1335212..1335484 (+) 273 WP_109941317.1 co-chaperone YbbN -
  ACKUB1_RS06460 (ACKUB1_06460) npdG 1335487..1336137 (+) 651 WP_109941316.1 NADPH-dependent F420 reductase -
  ACKUB1_RS06465 (ACKUB1_06465) - 1336141..1336677 (+) 537 WP_109941315.1 aldolase -
  ACKUB1_RS06470 (ACKUB1_06470) - 1336683..1337060 (+) 378 WP_109941314.1 hypothetical protein -
  ACKUB1_RS06475 (ACKUB1_06475) - 1337062..1337685 (-) 624 WP_109941313.1 hypothetical protein -
  ACKUB1_RS06480 (ACKUB1_06480) epdL 1337940..1339772 (+) 1833 WP_109941312.1 type II/IV secretion system ATPase subunit Machinery gene
  ACKUB1_RS06485 (ACKUB1_06485) epdJ 1339759..1340694 (+) 936 WP_109941311.1 type II secretion system F family protein Machinery gene
  ACKUB1_RS06490 (ACKUB1_06490) epdK 1340697..1341689 (+) 993 WP_109941310.1 type II secretion system F family protein Machinery gene
  ACKUB1_RS06495 (ACKUB1_06495) - 1341727..1343790 (-) 2064 WP_109941309.1 CHASE4 domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69107.89 Da        Isoelectric Point: 6.6322

>NTDB_id=1079773 ACKUB1_RS06480 WP_109941312.1 1337940..1339772(+) (epdL) [Methanospirillum stamsii strain Pt1]
MKLKVGSLKKPAKGSIKKEAPAPDTSPSESPPKEKSLKISALSGKKKDSPEKPSGLRRLGKKGTKNQEDKSEVPEEQAKK
GSIFSTLGKIAPLAKKREHYDPKVHGMMVNLTYEPPPGTEEIEVYPVNAPFAYIRITYNYSTHEYLYEVVEPIYTEAEKK
LLDELKKGIFERVNVNTRQISRETAAETLESMMNEVLIDYAINLDPLTYEKIHYHLRKDFLGDGLVDPIMHDRYIEDISC
DGVGRPLFVYHSRYESIESSLSYTDGVDLDSFVTKLAQRAGKHISVADPMLDATMQDGSRIQMTLGTEVTAHGSTFTIRK
FKEEPITPTDLIEWGTFSPLSIAFLWLAVENAKSCIFAGGTASGKTTSLNAISLFIPPLAKIVTLEDTRELKLPHANWIP
SVTRESFDVSGKGEIDMYELLRAALRQRPEYLIVGEVRGREALTLFQAMSTGHVTYSTMHADSVSSAVHRLENPPISVPR
NMLSALNLVCVQVQARVGGQRIRRNKQIIEVLDIDPRTNELITNEVFRWRQATDEISYSGKSFILEEIMESHGWDEERIR
RDLLQRQEVLEWMREKKIRDFRDVSKIVVSYFRDSETLMEQIRSGGNEYL

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=1079773 ACKUB1_RS06480 WP_109941312.1 1337940..1339772(+) (epdL) [Methanospirillum stamsii strain Pt1]
ATGAAACTTAAGGTGGGGAGTTTAAAAAAACCTGCGAAGGGATCAATAAAGAAAGAAGCACCTGCACCTGATACGTCACC
GTCTGAATCCCCTCCAAAGGAAAAATCCCTTAAAATATCCGCGCTATCCGGTAAAAAGAAAGATTCTCCAGAAAAACCCT
CCGGGCTTCGCCGTCTTGGAAAGAAAGGAACAAAGAATCAGGAGGATAAGTCCGAAGTTCCTGAAGAACAGGCGAAGAAA
GGATCAATCTTTAGTACACTTGGAAAGATTGCACCGCTTGCGAAAAAACGTGAGCATTATGATCCCAAGGTTCATGGGAT
GATGGTGAACCTCACCTATGAACCACCACCGGGAACCGAGGAGATTGAAGTATACCCGGTAAACGCCCCTTTTGCCTATA
TTCGTATCACGTACAATTACTCAACACATGAATACCTCTACGAAGTTGTAGAACCAATTTACACCGAAGCAGAAAAAAAA
CTCCTTGATGAGTTAAAAAAAGGGATCTTTGAGCGGGTGAATGTCAACACCCGTCAGATATCACGCGAGACTGCAGCAGA
AACCCTTGAATCCATGATGAATGAGGTTCTGATAGATTATGCCATTAACCTCGACCCCCTGACGTACGAAAAGATTCACT
ATCACCTTCGAAAAGACTTCCTTGGTGACGGGCTTGTAGATCCTATCATGCATGACAGGTACATTGAAGATATCTCCTGT
GATGGTGTTGGAAGGCCTCTTTTTGTGTATCATTCCAGGTATGAGTCTATCGAATCAAGTCTGTCTTATACTGACGGTGT
GGATCTTGATTCCTTTGTGACAAAACTTGCCCAGCGGGCAGGAAAGCACATCTCTGTTGCAGATCCCATGCTTGATGCGA
CGATGCAGGATGGGTCACGTATCCAGATGACCCTCGGGACTGAAGTTACTGCCCATGGTTCAACCTTTACCATTCGTAAA
TTCAAGGAAGAACCGATCACTCCGACAGACCTCATCGAATGGGGAACCTTCTCCCCTCTTTCTATTGCATTCCTCTGGCT
TGCTGTGGAGAATGCAAAATCCTGTATTTTTGCCGGGGGGACTGCTTCAGGAAAGACGACTTCACTGAATGCAATATCGC
TGTTTATTCCTCCTCTTGCAAAGATTGTTACCCTCGAGGACACCCGTGAACTCAAACTTCCCCATGCAAACTGGATTCCG
AGTGTAACCCGTGAATCATTTGATGTAAGTGGAAAAGGGGAGATTGACATGTATGAACTCTTAAGAGCTGCGCTTCGTCA
ACGCCCCGAATATCTGATCGTCGGTGAAGTCCGTGGTCGAGAAGCACTTACTCTTTTTCAGGCCATGTCAACCGGTCACG
TCACTTATTCAACGATGCACGCAGATTCGGTCTCTTCAGCAGTTCATCGTCTTGAAAACCCCCCTATCTCTGTGCCCAGA
AACATGCTTTCTGCATTAAATCTGGTCTGTGTACAGGTTCAGGCGCGTGTCGGGGGTCAGAGGATCAGGCGAAACAAGCA
GATTATTGAAGTTCTGGATATTGATCCCCGGACAAACGAACTGATAACGAATGAAGTGTTCAGGTGGCGTCAGGCTACCG
ATGAGATCTCGTACTCTGGAAAGTCATTCATCCTTGAAGAGATCATGGAATCGCATGGATGGGATGAGGAGCGAATCCGT
CGAGATCTGCTGCAAAGGCAGGAGGTCCTTGAATGGATGCGTGAGAAGAAGATCCGGGACTTCCGTGATGTGAGCAAGAT
AGTAGTCTCTTATTTCAGGGATTCAGAGACGCTGATGGAACAAATCCGGTCTGGTGGCAATGAATACTTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(232-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V2N8U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

71.107

87.377

0.621

Multiple sequence alignment