Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   ACKUB1_RS06490 Genome accession   NZ_CP176366
Coordinates   1340697..1341689 (+) Length   330 a.a.
NCBI ID   WP_109941310.1    Uniprot ID   A0A2V2N592
Organism   Methanospirillum stamsii strain Pt1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335697..1346689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUB1_RS06465 (ACKUB1_06465) - 1336141..1336677 (+) 537 WP_109941315.1 aldolase -
  ACKUB1_RS06470 (ACKUB1_06470) - 1336683..1337060 (+) 378 WP_109941314.1 hypothetical protein -
  ACKUB1_RS06475 (ACKUB1_06475) - 1337062..1337685 (-) 624 WP_109941313.1 hypothetical protein -
  ACKUB1_RS06480 (ACKUB1_06480) epdL 1337940..1339772 (+) 1833 WP_109941312.1 type II/IV secretion system ATPase subunit Machinery gene
  ACKUB1_RS06485 (ACKUB1_06485) epdJ 1339759..1340694 (+) 936 WP_109941311.1 type II secretion system F family protein Machinery gene
  ACKUB1_RS06490 (ACKUB1_06490) epdK 1340697..1341689 (+) 993 WP_109941310.1 type II secretion system F family protein Machinery gene
  ACKUB1_RS06495 (ACKUB1_06495) - 1341727..1343790 (-) 2064 WP_109941309.1 CHASE4 domain-containing protein -
  ACKUB1_RS06500 (ACKUB1_06500) - 1343950..1345401 (-) 1452 WP_109941308.1 response regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36238.43 Da        Isoelectric Point: 7.1429

>NTDB_id=1079775 ACKUB1_RS06490 WP_109941310.1 1340697..1341689(+) (epdK) [Methanospirillum stamsii strain Pt1]
MGLFNKKKKQEPSKDPKSDEIYSRIDTYYHYSEGALRFVKHPFRTLFEKPLNILYVSIPVGLVVFVIGLFMALQEGGPEA
LLTNSFIDDVAVFTTVIIVGPLAITDLLDGRRISSIEVALPNFFRDLAGMHESGMTLPGAIHLVSQAEYGALTPHIRQLD
QRISWNFSFIDAITHLGKEIPIPLVARSVDLVARASNAGGDIVEVLRAAGKDSSEYVIMKTDRKMNMFIYVIIILASFAV
FLFVVMILVSSFLKTMADLGAESGASGQAGFNLGGFDLALYIRVFSHAGMFQGFFSGLVAGVMGEGRVTAGLKYSVLMLL
IAWGTFRFMV

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1079775 ACKUB1_RS06490 WP_109941310.1 1340697..1341689(+) (epdK) [Methanospirillum stamsii strain Pt1]
ATGGGACTGTTTAATAAAAAGAAAAAGCAAGAGCCCTCCAAAGATCCGAAAAGCGATGAGATCTACTCACGGATAGATAC
CTACTATCATTACTCGGAAGGCGCTCTCCGGTTTGTAAAACACCCGTTCCGGACATTGTTTGAAAAGCCACTTAACATCC
TCTATGTCTCCATTCCTGTAGGTCTTGTGGTGTTTGTTATTGGTCTATTCATGGCCCTGCAGGAAGGTGGCCCTGAAGCG
CTGCTTACCAATTCCTTCATCGATGATGTTGCAGTTTTTACTACGGTAATTATTGTAGGCCCTCTGGCTATCACTGACCT
CCTTGATGGGCGACGAATCAGTAGTATTGAGGTAGCACTTCCAAACTTTTTCCGTGACCTTGCCGGGATGCATGAGAGTG
GGATGACCCTCCCGGGCGCGATTCACCTGGTATCACAGGCTGAATATGGGGCCCTTACTCCTCATATCCGGCAGCTTGAC
CAGCGGATATCATGGAACTTTTCCTTTATTGATGCAATTACTCATCTGGGAAAAGAGATCCCTATCCCTCTTGTAGCACG
AAGTGTAGATCTTGTGGCGCGGGCAAGTAATGCCGGTGGAGATATTGTCGAAGTTCTTCGCGCTGCCGGAAAAGACTCTT
CTGAATATGTGATAATGAAGACTGACCGGAAGATGAACATGTTCATCTATGTAATTATCATTCTTGCATCATTTGCAGTC
TTTTTATTCGTCGTCATGATCCTGGTCTCATCATTCCTAAAAACCATGGCAGACCTGGGTGCTGAATCCGGGGCCTCCGG
TCAGGCCGGGTTTAACCTGGGTGGGTTTGATCTTGCGCTTTATATCCGTGTTTTCTCTCACGCTGGGATGTTCCAGGGAT
TCTTCTCCGGTCTTGTTGCCGGGGTTATGGGAGAAGGAAGGGTGACTGCCGGCCTGAAATATTCTGTATTAATGCTCCTC
ATTGCGTGGGGAACGTTCCGGTTTATGGTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(123-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V2N592

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

54.516

93.939

0.512

Multiple sequence alignment