Detailed information NTG1079731

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACKUBV_RS14545
• Genome accession: NZ_CP176357
• Coordinates: 3051806..3052675 (-)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus strain AG1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3046806..3057675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUBV_RS14510 (ACKUBV_14510)	rpsP	3047820..3048068 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
ACKUBV_RS14515 (ACKUBV_14515)	rimM	3048097..3048645 (+)	549	WP_047123098.1	ribosome maturation factor RimM	-
ACKUBV_RS14520 (ACKUBV_14520)	trmD	3048673..3049416 (+)	744	WP_047123099.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACKUBV_RS14525 (ACKUBV_14525)	rplS	3049458..3049811 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
ACKUBV_RS14530 (ACKUBV_14530)	yacG	3050160..3050354 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
ACKUBV_RS14535 (ACKUBV_14535)	zapD	3050423..3051163 (-)	741	WP_005480890.1	cell division protein ZapD	-
ACKUBV_RS14540 (ACKUBV_14540)	coaE	3051191..3051805 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
ACKUBV_RS14545 (ACKUBV_14545)	pilD	3051806..3052675 (-)	870	WP_025533026.1	prepilin peptidase	Machinery gene
ACKUBV_RS14550 (ACKUBV_14550)	pilC	3052740..3053963 (-)	1224	WP_005493981.1	type II secretion system F family protein	Machinery gene
ACKUBV_RS14555 (ACKUBV_14555)	pilB	3053987..3055672 (-)	1686	WP_069536419.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACKUBV_RS14560 (ACKUBV_14560)	pilA	3055678..3056151 (-)	474	WP_069536420.1	pilin	Machinery gene
ACKUBV_RS14565 (ACKUBV_14565)	nadC	3056415..3057302 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=1079731 ACKUBV_RS14545 WP_025533026.1 3051806..3052675(-) (pilD) [Vibrio parahaemolyticus strain AG1]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1079731 ACKUBV_RS14545 WP_025533026.1 3051806..3052675(-) (pilD) [Vibrio parahaemolyticus strain AG1]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGTTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTTCAGTTACGACTACAAAAACAAGGCATAGAGAGAGCTTTCCCTTTCGGCCCGTATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45