Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACKN8U_RS01065 | Genome accession | NZ_CP176035 |
| Coordinates | 250468..250932 (+) | Length | 154 a.a. |
| NCBI ID | WP_025524817.1 | Uniprot ID | A0A7Z2MTQ1 |
| Organism | Vibrio parahaemolyticus strain L2181 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 245468..255932
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKN8U_RS01050 (ACKN8U_01050) | pdhR | 247500..248267 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| ACKN8U_RS01055 (ACKN8U_01055) | ampD | 248673..249224 (-) | 552 | WP_029803400.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACKN8U_RS01060 (ACKN8U_01060) | nadC | 249317..250204 (+) | 888 | WP_025638275.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACKN8U_RS01065 (ACKN8U_01065) | pilA | 250468..250932 (+) | 465 | WP_025524817.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACKN8U_RS01070 (ACKN8U_01070) | pilB | 250939..252624 (+) | 1686 | WP_193282266.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACKN8U_RS01075 (ACKN8U_01075) | pilC | 252649..253872 (+) | 1224 | WP_005462561.1 | type II secretion system F family protein | Machinery gene |
| ACKN8U_RS01080 (ACKN8U_01080) | pilD | 253937..254806 (+) | 870 | WP_005493974.1 | A24 family peptidase | Machinery gene |
| ACKN8U_RS01085 (ACKN8U_01085) | coaE | 254807..255421 (+) | 615 | WP_078558749.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16144.59 Da Isoelectric Point: 8.1135
>NTDB_id=1079433 ACKN8U_RS01065 WP_025524817.1 250468..250932(+) (pilA) [Vibrio parahaemolyticus strain L2181]
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKVAAAMKLAVELCAHENASDATTFKSNCLSGS
NGVPAKITNLNDISIEAVAGSSGVNVIAQAVVVKGPIAAKEQYIMASNYTGSGIEWTSSCKDAGGKAQTDYCPE
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKVAAAMKLAVELCAHENASDATTFKSNCLSGS
NGVPAKITNLNDISIEAVAGSSGVNVIAQAVVVKGPIAAKEQYIMASNYTGSGIEWTSSCKDAGGKAQTDYCPE
Nucleotide
Download Length: 465 bp
>NTDB_id=1079433 ACKN8U_RS01065 WP_025524817.1 250468..250932(+) (pilA) [Vibrio parahaemolyticus strain L2181]
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCTATTATCGGTATTTT
GGCTGCATTTGCCGTACCGGCATATCAAAACTATACAAAAAAAGCGACATTAGCGGAATTCCCCAAAGTAGCAGCAGCTA
TGAAATTAGCAGTTGAGTTGTGCGCACACGAAAATGCTTCGGATGCAACGACTTTTAAATCAAACTGTCTTTCCGGTAGT
AATGGGGTGCCTGCAAAGATTACTAACCTAAATGATATATCAATTGAAGCTGTCGCAGGGTCATCAGGTGTAAATGTTAT
TGCACAAGCAGTTGTAGTAAAAGGACCTATCGCAGCTAAAGAACAATACATAATGGCATCAAACTACACAGGAAGTGGCA
TTGAATGGACTAGCTCTTGTAAAGATGCAGGGGGTAAGGCTCAAACTGATTACTGCCCTGAATAA
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCTATTATCGGTATTTT
GGCTGCATTTGCCGTACCGGCATATCAAAACTATACAAAAAAAGCGACATTAGCGGAATTCCCCAAAGTAGCAGCAGCTA
TGAAATTAGCAGTTGAGTTGTGCGCACACGAAAATGCTTCGGATGCAACGACTTTTAAATCAAACTGTCTTTCCGGTAGT
AATGGGGTGCCTGCAAAGATTACTAACCTAAATGATATATCAATTGAAGCTGTCGCAGGGTCATCAGGTGTAAATGTTAT
TGCACAAGCAGTTGTAGTAAAAGGACCTATCGCAGCTAAAGAACAATACATAATGGCATCAAACTACACAGGAAGTGGCA
TTGAATGGACTAGCTCTTGTAAAGATGCAGGGGGTAAGGCTCAAACTGATTACTGCCCTGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
58.71 |
100 |
0.591 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.865 |
96.104 |
0.383 |
| pilA | Haemophilus influenzae 86-028NP |
41.429 |
90.909 |
0.377 |