Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACKN8U_RS01080 | Genome accession | NZ_CP176035 |
| Coordinates | 253937..254806 (+) | Length | 289 a.a. |
| NCBI ID | WP_005493974.1 | Uniprot ID | A0A249W3M2 |
| Organism | Vibrio parahaemolyticus strain L2181 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 248937..259806
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKN8U_RS01060 (ACKN8U_01060) | nadC | 249317..250204 (+) | 888 | WP_025638275.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACKN8U_RS01065 (ACKN8U_01065) | pilA | 250468..250932 (+) | 465 | WP_025524817.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACKN8U_RS01070 (ACKN8U_01070) | pilB | 250939..252624 (+) | 1686 | WP_193282266.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACKN8U_RS01075 (ACKN8U_01075) | pilC | 252649..253872 (+) | 1224 | WP_005462561.1 | type II secretion system F family protein | Machinery gene |
| ACKN8U_RS01080 (ACKN8U_01080) | pilD | 253937..254806 (+) | 870 | WP_005493974.1 | A24 family peptidase | Machinery gene |
| ACKN8U_RS01085 (ACKN8U_01085) | coaE | 254807..255421 (+) | 615 | WP_078558749.1 | dephospho-CoA kinase | - |
| ACKN8U_RS01090 (ACKN8U_01090) | zapD | 255449..256189 (+) | 741 | WP_023624252.1 | cell division protein ZapD | - |
| ACKN8U_RS01095 (ACKN8U_01095) | yacG | 256258..256452 (+) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| ACKN8U_RS01100 (ACKN8U_01100) | rplS | 256845..257198 (-) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| ACKN8U_RS01105 (ACKN8U_01105) | trmD | 257240..257983 (-) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACKN8U_RS01110 (ACKN8U_01110) | rimM | 258011..258559 (-) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| ACKN8U_RS01115 (ACKN8U_01115) | rpsP | 258588..258836 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32377.43 Da Isoelectric Point: 7.1971
>NTDB_id=1079436 ACKN8U_RS01080 WP_005493974.1 253937..254806(+) (pilD) [Vibrio parahaemolyticus strain L2181]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=1079436 ACKN8U_RS01080 WP_005493974.1 253937..254806(+) (pilD) [Vibrio parahaemolyticus strain L2181]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGCCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAGAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGCCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAGAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.927 |
100 |
0.889 |
| pilD | Vibrio cholerae strain A1552 |
73.611 |
99.654 |
0.734 |
| pilD | Acinetobacter baumannii D1279779 |
52.239 |
92.734 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
51.866 |
92.734 |
0.481 |
| pilD | Neisseria gonorrhoeae MS11 |
47.101 |
95.502 |
0.45 |