Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACKN8R_RS15910 | Genome accession | NZ_CP176031 |
| Coordinates | 3401761..3402288 (-) | Length | 175 a.a. |
| NCBI ID | WP_025592225.1 | Uniprot ID | A0A7Y0XCG9 |
| Organism | Vibrio parahaemolyticus strain L2171 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3396761..3407288
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKN8R_RS15890 (ACKN8R_15895) | - | 3397085..3397414 (-) | 330 | WP_005481006.1 | MSHA biogenesis protein MshK | - |
| ACKN8R_RS15895 (ACKN8R_15900) | gspM | 3397407..3398057 (-) | 651 | WP_005497276.1 | type II secretion system protein GspM | - |
| ACKN8R_RS15900 (ACKN8R_15905) | - | 3398054..3399499 (-) | 1446 | WP_005481017.1 | MSHA biogenesis protein MshI | - |
| ACKN8R_RS15905 (ACKN8R_15910) | csrD | 3399511..3401520 (-) | 2010 | WP_011106082.1 | RNase E specificity factor CsrD | - |
| ACKN8R_RS15910 (ACKN8R_15915) | ssb | 3401761..3402288 (-) | 528 | WP_025592225.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKN8R_RS15915 (ACKN8R_15920) | qstR | 3402567..3403211 (+) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ACKN8R_RS15920 (ACKN8R_15925) | galU | 3403469..3404341 (+) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19435.49 Da Isoelectric Point: 4.9269
>NTDB_id=1079424 ACKN8R_RS15910 WP_025592225.1 3401761..3402288(-) (ssb) [Vibrio parahaemolyticus strain L2171]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQ
QYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQ
QYNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1079424 ACKN8R_RS15910 WP_025592225.1 3401761..3402288(-) (ssb) [Vibrio parahaemolyticus strain L2171]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAGCAG
CAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAGCAG
CAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.829 |
| ssb | Glaesserella parasuis strain SC1401 |
57.447 |
100 |
0.617 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.486 |