Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ACKN8R_RS07875 Genome accession   NZ_CP176031
Coordinates   1678837..1679424 (+) Length   195 a.a.
NCBI ID   WP_409126726.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2171     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673837..1684424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8R_RS07855 (ACKN8R_07855) panP 1674006..1675652 (-) 1647 WP_005485571.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  ACKN8R_RS07860 (ACKN8R_07860) - 1675813..1676325 (-) 513 WP_005485575.1 hypothetical protein -
  ACKN8R_RS07865 (ACKN8R_07865) - 1676533..1677438 (-) 906 WP_005483516.1 lysine exporter LysO family protein -
  ACKN8R_RS07870 (ACKN8R_07870) - 1677546..1678466 (-) 921 WP_017448658.1 HDOD domain-containing protein -
  ACKN8R_RS07875 (ACKN8R_07875) tfoX 1678837..1679424 (+) 588 WP_409126726.1 TfoX/Sxy family DNA transformation protein Regulator
  ACKN8R_RS07880 (ACKN8R_07880) - 1679598..1680143 (-) 546 WP_005459590.1 hypothetical protein -
  ACKN8R_RS07885 (ACKN8R_07885) - 1680341..1680838 (-) 498 WP_020840443.1 response regulator -
  ACKN8R_RS07890 (ACKN8R_07890) - 1680835..1682775 (-) 1941 WP_025578401.1 ATP-binding protein -
  ACKN8R_RS07895 (ACKN8R_07895) - 1682962..1684227 (+) 1266 WP_267712377.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22519.91 Da        Isoelectric Point: 7.0628

>NTDB_id=1079407 ACKN8R_RS07875 WP_409126726.1 1678837..1679424(+) (tfoX) [Vibrio parahaemolyticus strain L2171]
MDMTDQAFFKYVRNFNEYQKRSMFGGIGLFSDDAMFALVSNDCCYLRGGNGLDEEFTLLNCEKYKHVKKQTTATVNYYDV
TDLFEFGFTGLDDLLRKSIDCSIKERKYQKSSASKRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVAYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1079407 ACKN8R_RS07875 WP_409126726.1 1678837..1679424(+) (tfoX) [Vibrio parahaemolyticus strain L2171]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAATTTTAATGAGTATCAGAAACGTTCTATGTTTGGTGGTAT
CGGCTTGTTTAGCGATGACGCCATGTTTGCGCTTGTCAGCAATGATTGCTGTTATTTGCGCGGCGGTAATGGTTTAGACG
AAGAATTTACTCTGCTTAATTGTGAAAAATACAAGCACGTCAAAAAACAGACGACGGCTACTGTAAACTATTATGACGTA
ACCGATTTATTTGAGTTCGGATTTACTGGCCTTGACGATTTGTTACGAAAATCTATTGATTGCTCAATTAAGGAGCGAAA
ATACCAAAAGTCTTCTGCAAGTAAACGTTTGAGAGATCTACCGAACATGCAGCTTACATTAGAGCGCATGGTTAAAAAGG
CGGGTATTGATGATGTTGAAACCTTTTTGGAACTTGGTCCAGTTGAAGTGTTCAACAAAGTAAGAGTTGCTTACGGCAAT
GATGTTGACGTTAAACTGCTGTGGAAGTTTGCTGGTGCCATTGATGGTGTGCACTGGAAACTAATCCAAGAGCCGCGCAA
AAAACAGTTACTGGCACTGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

99.487

100

0.995
  tfoX Vibrio campbellii strain DS40M4

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.394

98.974

0.677
  tfoX Vibrio cholerae strain A1552

68.394

98.974

0.677
  tfoX Aliivibrio fischeri ES114

57.068

97.949

0.559

Multiple sequence alignment