Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACKUFR_RS10575 | Genome accession | NZ_CP176004 |
| Coordinates | 2120810..2121319 (+) | Length | 169 a.a. |
| NCBI ID | WP_011651967.1 | Uniprot ID | - |
| Organism | Rhizobium johnstonii strain 3841 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2115810..2126319
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKUFR_RS10560 (ACKUFR_10560) | - | 2116337..2117143 (-) | 807 | WP_011651964.1 | DUF72 domain-containing protein | - |
| ACKUFR_RS10565 (ACKUFR_10565) | - | 2117168..2117629 (-) | 462 | WP_011651965.1 | GNAT family N-acetyltransferase | - |
| ACKUFR_RS10570 (ACKUFR_10570) | uvrA | 2117626..2120547 (-) | 2922 | WP_011651966.1 | excinuclease ABC subunit UvrA | - |
| ACKUFR_RS10575 (ACKUFR_10575) | ssb | 2120810..2121319 (+) | 510 | WP_011651967.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKUFR_RS10580 (ACKUFR_10580) | - | 2121444..2122091 (-) | 648 | WP_011651968.1 | MarC family protein | - |
| ACKUFR_RS10585 (ACKUFR_10585) | - | 2122153..2122335 (+) | 183 | WP_129557794.1 | hypothetical protein | - |
| ACKUFR_RS10590 (ACKUFR_10590) | gyrA | 2122328..2125165 (+) | 2838 | WP_011651969.1 | DNA gyrase subunit A | - |
| ACKUFR_RS10595 (ACKUFR_10595) | - | 2125349..2125483 (-) | 135 | WP_018445350.1 | hypothetical protein | - |
| ACKUFR_RS10600 (ACKUFR_10600) | - | 2125520..2125675 (-) | 156 | WP_003539654.1 | hypothetical protein | - |
| ACKUFR_RS10605 (ACKUFR_10605) | - | 2125810..2126088 (-) | 279 | WP_028744078.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18080.82 Da Isoelectric Point: 5.3175
>NTDB_id=1079333 ACKUFR_RS10575 WP_011651967.1 2120810..2121319(+) (ssb) [Rhizobium johnstonii strain 3841]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGGGGNFS
RDLDDDIPF
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPASSPSRGGGGGGNFS
RDLDDDIPF
Nucleotide
Download Length: 510 bp
>NTDB_id=1079333 ACKUFR_RS10575 WP_011651967.1 2120810..2121319(+) (ssb) [Rhizobium johnstonii strain 3841]
ATGGCTGGTAGCGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACTTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAAAAGACTGAAT
GGCACACTGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGCTCGACGCTTACGATGCTCGACGGCCGCGGTGAAGGTGGCGGTGCGAGCGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGACGATTACGGCGCCCCGGCTCCCGCCTCATCGCCGAGCCGCGGCGGTGGCGGCGGCGGCAACTTCTCG
CGGGATCTCGATGATGACATCCCGTTCTGA
ATGGCTGGTAGCGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACTTGGCGCGACCGCAATTCCGGCGAGCGCCGTGAAAAGACTGAAT
GGCACACTGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGCTCGACGCTTACGATGCTCGACGGCCGCGGTGAAGGTGGCGGTGCGAGCGGCGGCCGTGGCAGTGCCGGTGGCGGCA
ACGATTATGGCGACGATTACGGCGCCCCGGCTCCCGCCTCATCGCCGAGCCGCGGCGGTGGCGGCGGCGGCAACTTCTCG
CGGGATCTCGATGATGACATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.289 |
100 |
0.515 |
| ssb | Glaesserella parasuis strain SC1401 |
43.979 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
39.011 |
100 |
0.42 |
| ssb | Neisseria gonorrhoeae MS11 |
38.547 |
100 |
0.408 |