Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFLKC_RS17695 Genome accession   NZ_CP175916
Coordinates   3828086..3828541 (-) Length   151 a.a.
NCBI ID   WP_053467162.1    Uniprot ID   A0AAE4FMD3
Organism   Clostridium sp. FAM 27665     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3823086..3833541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFLKC_RS17670 (ACFLKC_17670) rplI 3823912..3824355 (-) 444 WP_053467167.1 50S ribosomal protein L9 -
  ACFLKC_RS17675 (ACFLKC_17675) - 3824355..3826340 (-) 1986 WP_053467166.1 DHH family phosphoesterase -
  ACFLKC_RS17680 (ACFLKC_17680) - 3826341..3827348 (-) 1008 WP_409069084.1 YybS family protein -
  ACFLKC_RS17685 (ACFLKC_17685) - 3827360..3827677 (-) 318 WP_053467164.1 MazG-like family protein -
  ACFLKC_RS17690 (ACFLKC_17690) rpsR 3827825..3828067 (-) 243 WP_053467163.1 30S ribosomal protein S18 -
  ACFLKC_RS17695 (ACFLKC_17695) ssbA 3828086..3828541 (-) 456 WP_053467162.1 single-stranded DNA-binding protein Machinery gene
  ACFLKC_RS17700 (ACFLKC_17700) rpsF 3828557..3828841 (-) 285 WP_041349302.1 30S ribosomal protein S6 -
  ACFLKC_RS17705 (ACFLKC_17705) - 3828947..3830095 (-) 1149 WP_053467161.1 double-cubane-cluster-containing anaerobic reductase -
  ACFLKC_RS17710 (ACFLKC_17710) - 3830273..3830470 (-) 198 WP_053467160.1 DUF951 domain-containing protein -
  ACFLKC_RS17715 (ACFLKC_17715) - 3830486..3831355 (-) 870 WP_163207797.1 mechanosensitive ion channel family protein -
  ACFLKC_RS17720 (ACFLKC_17720) - 3831362..3831607 (-) 246 WP_163207799.1 DUF3343 domain-containing protein -
  ACFLKC_RS17725 (ACFLKC_17725) - 3831798..3832952 (+) 1155 WP_163207801.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16781.57 Da        Isoelectric Point: 4.6619

>NTDB_id=1079141 ACFLKC_RS17695 WP_053467162.1 3828086..3828541(-) (ssbA) [Clostridium sp. FAM 27665]
MNKVVLIGRLTKDPELRFTPGNGTAVATFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGNKPTTDSTYNNGSEPSYQSNQGNQGFGNENSFDDDIIPVDDGDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1079141 ACFLKC_RS17695 WP_053467162.1 3828086..3828541(-) (ssbA) [Clostridium sp. FAM 27665]
TTGAATAAAGTTGTTTTAATAGGTAGATTAACCAAAGATCCTGAGTTAAGATTTACTCCAGGAAACGGGACAGCAGTTGC
CACCTTTACTTTGGCTGTAGATAGAAGATTTTCAAAAGATGGTCAGAGAGAAGCAGATTTTATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCCACAGCTAACTATATGAGTAAAGGAAAACTTATGGGGGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCAAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGCAATAA
GCCTACAACGGATTCAACATATAATAATGGATCAGAACCAAGTTATCAATCAAACCAAGGCAACCAAGGTTTTGGAAATG
AAAACAGTTTTGATGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.57
  ssb Latilactobacillus sakei subsp. sakei 23K

48.837

85.43

0.417
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.311

68.212

0.384
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.398

68.212

0.364

Multiple sequence alignment