Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJJVF_RS21100 Genome accession   NZ_CP175682
Coordinates   4348854..4349390 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain Z1324PEC0010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4343854..4354390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJVF_RS21070 soxR 4344806..4345270 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ACJJVF_RS21075 soxS 4345356..4345679 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ACJJVF_RS21080 pdeC 4345682..4346404 (-) 723 Protein_4125 c-di-GMP phosphodiesterase PdeC -
  ACJJVF_RS21090 pdeC 4347169..4348044 (-) 876 Protein_4127 c-di-GMP phosphodiesterase PdeC -
  ACJJVF_RS21095 yjcB 4348474..4348755 (+) 282 WP_001295689.1 YjcB family protein -
  ACJJVF_RS21100 ssb 4348854..4349390 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACJJVF_RS21105 uvrA 4349644..4352466 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ACJJVF_RS21110 yjbR 4352501..4352857 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ACJJVF_RS21115 yjbQ 4352861..4353277 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACJJVF_RS21120 aphA 4353388..4354101 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1078699 ACJJVF_RS21100 WP_000168305.1 4348854..4349390(-) (ssb) [Escherichia coli strain Z1324PEC0010]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1078699 ACJJVF_RS21100 WP_000168305.1 4348854..4349390(-) (ssb) [Escherichia coli strain Z1324PEC0010]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment