Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJ5GV_RS05990 Genome accession   NZ_CP175669
Coordinates   1245474..1245995 (+) Length   173 a.a.
NCBI ID   WP_079211933.1    Uniprot ID   -
Organism   Brucella pseudogrignonensis strain NBC51/LBA8980     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1240474..1250995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ5GV_RS05975 - 1240509..1240784 (+) 276 WP_007875106.1 HU family DNA-binding protein -
  ACJ5GV_RS05980 - 1240893..1241666 (+) 774 WP_408913504.1 phosphodiester glycosidase family protein -
  ACJ5GV_RS05985 uvrA 1241695..1244619 (-) 2925 WP_312470457.1 excinuclease ABC subunit UvrA -
  ACJ5GV_RS05990 ssb 1245474..1245995 (+) 522 WP_079211933.1 single-stranded DNA-binding protein Machinery gene
  ACJ5GV_RS05995 arsC 1246212..1246637 (-) 426 WP_312470456.1 arsenate reductase (glutaredoxin) -
  ACJ5GV_RS06000 phnF 1246892..1247662 (-) 771 WP_312470467.1 phosphonate metabolism transcriptional regulator PhnF -
  ACJ5GV_RS06005 phnG 1247795..1248322 (+) 528 WP_079211931.1 phosphonate C-P lyase system protein PhnG -
  ACJ5GV_RS06010 phnH 1248322..1248933 (+) 612 WP_312470453.1 phosphonate C-P lyase system protein PhnH -
  ACJ5GV_RS06015 - 1248937..1250106 (+) 1170 WP_113485253.1 carbon-phosphorus lyase complex subunit PhnI -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18645.38 Da        Isoelectric Point: 5.3476

>NTDB_id=1078621 ACJ5GV_RS05990 WP_079211933.1 1245474..1245995(+) (ssb) [Brucella pseudogrignonensis strain NBC51/LBA8980]
MAGSVNKVILVGNLGADPEIRRLNSGDQIANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDGRGEGGGEGRSFGGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGGG
GGFSRDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1078621 ACJ5GV_RS05990 WP_079211933.1 1245474..1245995(+) (ssb) [Brucella pseudogrignonensis strain NBC51/LBA8980]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCTGAAATTCGTCGCCTCAATTCAGGTGA
TCAGATCGCCAATCTGCGCATCGCGACTTCGGAAAGCTGGCGCGACCGTCAGACCGGTGAACGCAAGGATCGTACCGAAT
GGCACAGCGTTGTCATTTTCAACGAAAATCTTGCTAAGGTTGCCGAGCAGTATCTGAAAAAGGGTGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGACCAGAACGGCAACGACCGCTACAGCACCGAAATCGTGTTGCAGAAGTT
CCGCGGCGAGCTTCAGATGCTCGATGGCCGTGGTGAAGGCGGCGGCGAAGGTCGCTCATTCGGTGGTGGTGGCGGTGGCA
ATCGCAACCAGATGTCGGATTATTCCGGCGGCGGTGGTGATTTCGGTTCCTCCGGCCCATCAAATCAGGGTGGCGGCGGC
GGTGGTTTCTCCCGCGATCTCGACGACGAAATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.538
  ssb Vibrio cholerae strain A1552

48.588

100

0.497
  ssb Neisseria meningitidis MC58

38.889

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.333

100

0.399

Multiple sequence alignment