Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACJU26_RS14790 Genome accession   NZ_CP175559
Coordinates   2838922..2840274 (-) Length   450 a.a.
NCBI ID   WP_414040361.1    Uniprot ID   -
Organism   Acidithiobacillus sp. M4-SHS-6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833922..2845274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJU26_RS14755 (ACJU26_14755) - 2834056..2834298 (+) 243 WP_414040354.1 helix-turn-helix domain-containing protein -
  ACJU26_RS14760 (ACJU26_14760) - 2834280..2834945 (-) 666 WP_414040355.1 transglycosylase SLT domain-containing protein -
  ACJU26_RS14765 (ACJU26_14765) - 2834972..2835391 (-) 420 WP_414040356.1 ClpXP protease specificity-enhancing factor -
  ACJU26_RS14770 (ACJU26_14770) - 2835625..2836629 (-) 1005 WP_414040357.1 class 1 fructose-bisphosphatase -
  ACJU26_RS14775 (ACJU26_14775) - 2836668..2837414 (-) 747 WP_414040358.1 cell division protein ZapD -
  ACJU26_RS14780 (ACJU26_14780) coaE 2837510..2838118 (-) 609 WP_414040359.1 dephospho-CoA kinase -
  ACJU26_RS14785 (ACJU26_14785) - 2838125..2838925 (-) 801 WP_414040360.1 prepilin peptidase -
  ACJU26_RS14790 (ACJU26_14790) pilR 2838922..2840274 (-) 1353 WP_414040361.1 sigma-54-dependent transcriptional regulator Regulator
  ACJU26_RS14795 (ACJU26_14795) - 2840271..2841449 (-) 1179 WP_414040362.1 two-component system sensor histidine kinase NtrB -
  ACJU26_RS14800 (ACJU26_14800) - 2841370..2841885 (-) 516 WP_414040363.1 hypothetical protein -
  ACJU26_RS14805 (ACJU26_14805) pilB 2841921..2843636 (-) 1716 WP_414040364.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJU26_RS14810 (ACJU26_14810) - 2843606..2844508 (-) 903 WP_414040365.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 48823.03 Da        Isoelectric Point: 5.9505

>NTDB_id=1078204 ACJU26_RS14790 WP_414040361.1 2838922..2840274(-) (pilR) [Acidithiobacillus sp. M4-SHS-6]
MTTSRSAPSALVVDDEPNIVELLRITLEGMGLEVSGAHSLAEAHGCLSAGLPSLVLSDLRLPDGSGIDLVRRLHEEHPQL
PVAVITAYSSADGAVEAMQAGAFDYMSKPIELVRLRHLVAQALKLSNPQNAEHDATDRLVGRSPLMQQLREDIRKLARSN
APVHITGESGTGKELAARAIHDSSLRHDKPFVAVNCGAIPEGLIESELFGAEKGAYSGATRARQGLFQVANGGTLFLDEI
GELPMLMQVKLLRAIQERVIRPLGGTREISLDLRFISATHRNLAAMVEAGTFRQDLLYRLNVIQLHVPPLRERLEDIPQL
VDVILQRMNRQGDRSPATLAEGAMTRLLEYDFPGNVRELENLLERSLVFPDKNILETIPATARVEAQPPVPRVPKSESVV
ARVLDDAEAALLCSMLEAAAGDVTVAAQRLGLCPQSFTLRHARSLTGSLG

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=1078204 ACJU26_RS14790 WP_414040361.1 2838922..2840274(-) (pilR) [Acidithiobacillus sp. M4-SHS-6]
ATGACGACGAGCCGATCTGCTCCTTCTGCGCTGGTTGTGGATGACGAGCCCAATATCGTCGAATTATTACGCATTACCCT
GGAAGGGATGGGGCTGGAAGTGTCTGGTGCCCACTCCCTGGCCGAAGCCCATGGGTGTCTTTCCGCAGGACTCCCCTCTT
TGGTCTTGAGTGATTTGCGCCTGCCGGATGGTTCGGGTATTGATCTGGTGCGCCGTCTGCACGAGGAACATCCCCAGCTT
CCGGTGGCGGTCATTACCGCCTATTCATCGGCCGATGGTGCTGTCGAAGCCATGCAGGCAGGGGCTTTTGACTACATGTC
CAAACCCATTGAGCTGGTGCGCCTGCGGCACCTTGTAGCCCAGGCCCTCAAGCTGAGCAATCCACAAAATGCAGAGCACG
ATGCTACGGACAGGCTGGTCGGGCGTTCTCCCCTGATGCAGCAATTAAGAGAAGATATTCGCAAGCTCGCGCGCAGTAAT
GCTCCCGTACATATCACTGGTGAATCAGGCACCGGCAAAGAGCTCGCAGCCCGGGCCATTCATGATTCCAGCTTGCGCCA
TGACAAGCCTTTTGTGGCAGTGAACTGTGGCGCGATTCCTGAAGGCTTGATCGAGAGTGAGTTGTTTGGGGCCGAAAAGG
GTGCCTATTCCGGGGCCACCCGGGCACGCCAGGGACTCTTCCAGGTGGCGAATGGCGGTACGCTTTTTCTGGATGAAATT
GGCGAGTTACCCATGTTGATGCAGGTCAAATTACTGCGTGCCATTCAGGAACGGGTGATCCGCCCCCTGGGCGGGACGCG
GGAAATCTCTCTGGACCTGCGCTTTATCTCGGCGACCCATCGTAACCTTGCAGCCATGGTGGAAGCCGGGACCTTTCGCC
AGGACCTCCTGTATCGCCTGAATGTCATCCAGCTACATGTTCCCCCTTTGCGCGAGCGACTGGAAGACATTCCCCAACTG
GTGGATGTCATTCTTCAGCGGATGAACAGGCAGGGAGACCGGAGTCCGGCGACCTTGGCTGAAGGCGCAATGACCAGACT
GCTGGAATATGATTTCCCGGGTAACGTGCGCGAGCTGGAGAATTTACTGGAGCGCAGTCTGGTCTTTCCGGATAAGAATA
TTCTGGAAACCATCCCGGCAACCGCCCGGGTTGAGGCTCAGCCTCCAGTTCCGCGCGTCCCCAAATCGGAATCTGTTGTG
GCGCGGGTTCTGGATGATGCTGAAGCTGCTTTGCTGTGCAGCATGCTTGAAGCGGCTGCCGGAGATGTCACTGTGGCCGC
GCAGCGGTTGGGGCTATGCCCACAATCATTTACACTCAGACATGCGCGTAGCTTGACAGGAAGCCTCGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-119)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.481

97.556

0.502
  pilR Acinetobacter baumannii strain A118

43.764

100

0.444

Multiple sequence alignment