Detailed information NTG1078193

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: ACJU26_RS04240
• Genome accession: NZ_CP175559
• Coordinates: 816362..816856 (-)
• Length: 164 a.a.
• NCBI ID: WP_414041292.1
• Uniprot ID: -
• Organism: Acidithiobacillus sp. M4-SHS-6
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	814829..825604	816362..816856	within	0

Gene organization within MGE regions

Location: 814829..825604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJU26_RS04225 (ACJU26_04225)	-	814829..814999 (+)	171	WP_414041290.1	hypothetical protein	-
ACJU26_RS04230 (ACJU26_04230)	-	814999..815181 (+)	183	Protein_829	hypothetical protein	-
ACJU26_RS04235 (ACJU26_04235)	-	815376..815888 (+)	513	WP_414041291.1	hypothetical protein	-
ACJU26_RS04240 (ACJU26_04240)	ssb	816362..816856 (-)	495	WP_414041292.1	single-stranded DNA-binding protein	Machinery gene
ACJU26_RS04245 (ACJU26_04245)	-	816914..817804 (-)	891	WP_414041293.1	DNA adenine methylase	-
ACJU26_RS04250 (ACJU26_04250)	-	817801..818886 (-)	1086	WP_414041294.1	hypothetical protein	-
ACJU26_RS04255 (ACJU26_04255)	-	818973..819824 (-)	852	WP_414041295.1	ATP-binding protein	-
ACJU26_RS04260 (ACJU26_04260)	-	819834..820844 (-)	1011	WP_414041296.1	DUF1376 domain-containing protein	-
ACJU26_RS04265 (ACJU26_04265)	-	820959..821171 (-)	213	WP_414041297.1	transcriptional regulator	-
ACJU26_RS04270 (ACJU26_04270)	-	821259..821438 (+)	180	Protein_837	helix-turn-helix domain-containing protein	-
ACJU26_RS04275 (ACJU26_04275)	-	821478..821789 (+)	312	WP_414042009.1	hypothetical protein	-
ACJU26_RS04280 (ACJU26_04280)	-	821786..822508 (+)	723	WP_414041298.1	hypothetical protein	-
ACJU26_RS04285 (ACJU26_04285)	-	822510..823352 (+)	843	WP_414041299.1	DUF3037 domain-containing protein	-
ACJU26_RS04290 (ACJU26_04290)	-	823424..823714 (-)	291	WP_414041300.1	CopG family ribbon-helix-helix protein	-
ACJU26_RS04295 (ACJU26_04295)	-	823932..824276 (+)	345	WP_414041301.1	hypothetical protein	-
ACJU26_RS04300 (ACJU26_04300)	-	824356..824568 (+)	213	WP_414041302.1	DUF4224 domain-containing protein	-
ACJU26_RS04305 (ACJU26_04305)	-	824579..825604 (+)	1026	WP_414041303.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 164 a.a.
• Molecular weight: 18199.33 Da
• Isoelectric Point: 6.7268

>NTDB_id=1078193 ACJU26_RS04240 WP_414041292.1 816362..816856(-) (ssb) [Acidithiobacillus sp. M4-SHS-6]
MAGVNKVILLGHLGRDPEMRYMPDGTAVANMTIATSESYKDRDGNKQERTEWHRVALYARTAEVAGEFLRKGSQAYIEGR
IRTRKWTDKDGQDRYTTEIVGDRLQLIGGRRDGAAGDTPAPQHGGGGGGDMGSAPMEDFDDDIPFITTAENICQPRRLLN
RVRF

Nucleotide

• Length: 495 bp

>NTDB_id=1078193 ACJU26_RS04240 WP_414041292.1 816362..816856(-) (ssb) [Acidithiobacillus sp. M4-SHS-6]
ATGGCAGGCGTGAATAAAGTGATTTTGTTGGGTCATCTGGGCCGGGATCCGGAGATGCGGTACATGCCCGACGGGACGGC
CGTCGCCAATATGACCATCGCCACGTCGGAATCCTACAAGGATCGGGACGGGAACAAGCAAGAGCGCACCGAATGGCATC
GTGTCGCACTCTATGCGAGGACGGCGGAAGTCGCCGGTGAATTTTTGCGCAAAGGAAGTCAGGCGTACATCGAGGGACGT
ATCCGCACCAGAAAATGGACCGATAAGGACGGTCAGGATCGCTACACGACAGAGATTGTGGGGGACCGGCTTCAGTTGAT
CGGTGGCCGCCGGGATGGGGCCGCTGGCGACACTCCTGCGCCACAGCATGGCGGTGGAGGTGGCGGGGACATGGGGTCCG
CGCCGATGGAAGATTTTGATGACGACATCCCGTTCATCACCACAGCGGAAAACATCTGCCAGCCACGGCGGCTGCTGAAT
CGAGTGCGTTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-106)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	50.867	100	0.537
ssb	Glaesserella parasuis strain SC1401	46.111	100	0.506
ssb	Neisseria meningitidis MC58	41.86	100	0.439
ssb	Neisseria gonorrhoeae MS11	41.86	100	0.439