Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJU26_RS01945 Genome accession   NZ_CP175559
Coordinates   396534..397004 (+) Length   156 a.a.
NCBI ID   WP_414040882.1    Uniprot ID   -
Organism   Acidithiobacillus sp. M4-SHS-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 391534..402004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJU26_RS01930 (ACJU26_01930) trxA 392080..392949 (-) 870 WP_414040879.1 thioredoxin -
  ACJU26_RS01935 (ACJU26_01935) - 393034..393588 (-) 555 WP_414040880.1 hypothetical protein -
  ACJU26_RS01940 (ACJU26_01940) uvrA 393630..396431 (-) 2802 WP_414040881.1 excinuclease ABC subunit UvrA -
  ACJU26_RS01945 (ACJU26_01945) ssb 396534..397004 (+) 471 WP_414040882.1 single-stranded DNA-binding protein Machinery gene
  ACJU26_RS01950 (ACJU26_01950) - 397175..397384 (-) 210 WP_414040883.1 DUF2892 domain-containing protein -
  ACJU26_RS01955 (ACJU26_01955) tal 397577..398668 (+) 1092 WP_414040884.1 transaldolase -
  ACJU26_RS01960 (ACJU26_01960) - 398699..399472 (-) 774 WP_414040885.1 enoyl-ACP reductase -
  ACJU26_RS01965 (ACJU26_01965) - 399496..401316 (-) 1821 WP_414040886.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17038.83 Da        Isoelectric Point: 5.3147

>NTDB_id=1078191 ACJU26_RS01945 WP_414040882.1 396534..397004(+) (ssb) [Acidithiobacillus sp. M4-SHS-6]
MAGVNKVILLGHLGRDPEMRYQPSGAAIANFSIATSETFKDRDGNKQERTEWHRIVLFGRTAEIAGEYLRKGSLAYVEGR
LQTRKWTDKDGQERYTTEIIGDRLQLVGSRSGGGAASFDEEDHGGGRSSAAPAPAGAGRKQDAPPPMEDFDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1078191 ACJU26_RS01945 WP_414040882.1 396534..397004(+) (ssb) [Acidithiobacillus sp. M4-SHS-6]
ATGGCGGGAGTGAACAAGGTCATATTACTAGGACATCTGGGCCGGGACCCGGAGATGCGTTATCAGCCCAGCGGGGCGGC
TATAGCCAATTTCAGCATTGCCACCTCCGAAACCTTCAAGGATCGGGATGGCAACAAGCAGGAGCGCACTGAATGGCATC
GGATAGTGCTGTTTGGCCGCACTGCGGAAATTGCCGGAGAATATTTGCGCAAGGGCAGCTTGGCCTATGTGGAAGGGCGC
CTGCAGACCCGCAAATGGACGGACAAGGACGGCCAGGAGCGCTACACCACGGAAATCATCGGCGACCGCCTGCAACTGGT
GGGATCACGCAGCGGCGGTGGAGCGGCCAGCTTTGATGAAGAAGATCATGGCGGTGGACGCTCCTCTGCGGCTCCCGCGC
CTGCCGGTGCAGGACGCAAGCAGGATGCTCCCCCGCCCATGGAAGATTTTGATGATGATATTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.571
  ssb Vibrio cholerae strain A1552

48.851

100

0.545
  ssb Neisseria gonorrhoeae MS11

47.429

100

0.532
  ssb Neisseria meningitidis MC58

46.512

100

0.513

Multiple sequence alignment