Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJ2CR_RS21625 Genome accession   NZ_CP175551
Coordinates   5680805..5681302 (-) Length   165 a.a.
NCBI ID   WP_223746150.1    Uniprot ID   -
Organism   Myxococcus fulvus strain KYC1117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5675805..5686302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ2CR_RS21605 (ACJ2CR_21605) - 5676884..5677633 (-) 750 WP_223783446.1 phosphoribosyltransferase -
  ACJ2CR_RS21610 (ACJ2CR_21610) - 5677754..5678785 (-) 1032 WP_141324630.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
  ACJ2CR_RS21615 (ACJ2CR_21615) - 5678820..5679710 (-) 891 WP_223746152.1 Hsp33 family molecular chaperone HslO -
  ACJ2CR_RS21620 (ACJ2CR_21620) - 5679976..5680653 (+) 678 WP_223746151.1 succinate dehydrogenase -
  ACJ2CR_RS21625 (ACJ2CR_21625) ssb 5680805..5681302 (-) 498 WP_223746150.1 single-stranded DNA-binding protein Machinery gene
  ACJ2CR_RS21630 (ACJ2CR_21630) dacB 5681849..5684119 (-) 2271 WP_408888035.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  ACJ2CR_RS21635 (ACJ2CR_21635) dtd 5684335..5684805 (+) 471 WP_223783449.1 D-aminoacyl-tRNA deacylase -
  ACJ2CR_RS21640 (ACJ2CR_21640) - 5684895..5685740 (-) 846 WP_141324636.1 hypothetical protein -
  ACJ2CR_RS21645 (ACJ2CR_21645) - 5685762..5686223 (-) 462 WP_408888036.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17738.48 Da        Isoelectric Point: 5.3106

>NTDB_id=1078102 ACJ2CR_RS21625 WP_223746150.1 5680805..5681302(-) (ssb) [Myxococcus fulvus strain KYC1117]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDAGDNMGSGGGGGGRRNFGSQPRGGDNNDYGQPPPMDDGMGGGGGGNNE
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1078102 ACJ2CR_RS21625 WP_223746150.1 5680805..5681302(-) (ssb) [Myxococcus fulvus strain KYC1117]
ATGGCAGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTGGGCGCGGACCCCGAAGTGCGGTTCACCCCGGGAGGTCA
GGCGGTCGCGAACTTCCGCATCGCGACCAGCGAGAGCTGGACCGACAAGAACGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGTGAGTGGACCGACAAGGAGAACCGCAAGAACTACACGACCGAGGTCGTGGCCAACGCGGTGACGTT
CCTGGGCGGCCGTGACGCCGGGGACAACATGGGCAGCGGCGGCGGTGGTGGCGGGCGCCGGAACTTCGGCTCGCAGCCGC
GCGGCGGCGACAACAACGACTACGGCCAGCCGCCTCCGATGGATGACGGCATGGGCGGTGGCGGCGGCGGCAACAACGAG
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.541

100

0.527
  ssb Glaesserella parasuis strain SC1401

39.791

100

0.461
  ssb Neisseria gonorrhoeae MS11

53.782

72.121

0.388
  ssb Neisseria meningitidis MC58

53.782

72.121

0.388

Multiple sequence alignment