Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACJYYY_RS11280 | Genome accession | NZ_CP175511 |
| Coordinates | 2299279..2299815 (-) | Length | 178 a.a. |
| NCBI ID | WP_035313812.1 | Uniprot ID | W7CW74 |
| Organism | Brochothrix campestris strain DSM 4712 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2294279..2304815
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJYYY_RS11260 (ACJYYY_11260) | - | 2294590..2296569 (-) | 1980 | WP_035313806.1 | DHH family phosphoesterase | - |
| ACJYYY_RS11265 (ACJYYY_11265) | - | 2296828..2297871 (+) | 1044 | WP_232217907.1 | YitT family protein | - |
| ACJYYY_RS11270 (ACJYYY_11270) | - | 2297895..2298674 (+) | 780 | WP_035313808.1 | DUF2785 domain-containing protein | - |
| ACJYYY_RS11275 (ACJYYY_11275) | rpsR | 2299013..2299252 (-) | 240 | WP_035313810.1 | 30S ribosomal protein S18 | - |
| ACJYYY_RS11280 (ACJYYY_11280) | ssbA | 2299279..2299815 (-) | 537 | WP_035313812.1 | single-stranded DNA-binding protein | Machinery gene |
| ACJYYY_RS11285 (ACJYYY_11285) | rpsF | 2299853..2300143 (-) | 291 | WP_035313814.1 | 30S ribosomal protein S6 | - |
| ACJYYY_RS11290 (ACJYYY_11290) | - | 2300343..2300966 (-) | 624 | WP_408868962.1 | response regulator transcription factor | - |
| ACJYYY_RS11295 (ACJYYY_11295) | - | 2301401..2302777 (+) | 1377 | WP_035313817.1 | aldehyde dehydrogenase | - |
| ACJYYY_RS11300 (ACJYYY_11300) | - | 2303282..2303821 (-) | 540 | WP_035313262.1 | PadR family transcriptional regulator | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19263.93 Da Isoelectric Point: 5.2372
>NTDB_id=1077903 ACJYYY_RS11280 WP_035313812.1 2299279..2299815(-) (ssbA) [Brochothrix campestris strain DSM 4712]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRTFTNQQGDREADFINCVVWRKAAENVANFLKKGSLAGVDGRLQTR
NYESNDGRRVYVTEVVAESVQFLEPRNASAGNSGTGGNNQGGNSYNNNSSYSGGNQQPQSNQGNAYNQESQQSSKPAFSN
PFASDGKPIDISDDDLPF
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRTFTNQQGDREADFINCVVWRKAAENVANFLKKGSLAGVDGRLQTR
NYESNDGRRVYVTEVVAESVQFLEPRNASAGNSGTGGNNQGGNSYNNNSSYSGGNQQPQSNQGNAYNQESQQSSKPAFSN
PFASDGKPIDISDDDLPF
Nucleotide
Download Length: 537 bp
>NTDB_id=1077903 ACJYYY_RS11280 WP_035313812.1 2299279..2299815(-) (ssbA) [Brochothrix campestris strain DSM 4712]
ATGATGAATCGTGTTGTTCTTGTGGGTCGTTTAACTAAGGATCCTGAACTTCGATACACACCAGCTGGTGCAGCTGTAGC
CACATTTACACTAGCTGTAAATCGTACGTTTACGAATCAACAAGGGGATCGAGAAGCTGATTTCATTAACTGTGTTGTTT
GGCGAAAAGCGGCAGAAAACGTTGCTAACTTTCTTAAAAAAGGAAGCTTGGCAGGTGTAGATGGTCGTTTACAAACGCGT
AATTATGAATCAAATGATGGTCGTCGTGTGTATGTAACTGAAGTGGTCGCTGAAAGTGTCCAATTTTTAGAGCCGCGTAA
TGCTAGCGCAGGAAATTCAGGTACGGGTGGTAACAATCAAGGCGGCAATAGTTATAATAACAACAGTTCTTATAGCGGTG
GAAATCAACAGCCACAATCAAATCAAGGAAATGCGTACAATCAAGAGTCTCAACAATCGAGCAAGCCTGCTTTCAGCAAT
CCATTTGCAAGTGATGGCAAGCCAATCGATATTTCTGACGATGATTTACCATTCTAA
ATGATGAATCGTGTTGTTCTTGTGGGTCGTTTAACTAAGGATCCTGAACTTCGATACACACCAGCTGGTGCAGCTGTAGC
CACATTTACACTAGCTGTAAATCGTACGTTTACGAATCAACAAGGGGATCGAGAAGCTGATTTCATTAACTGTGTTGTTT
GGCGAAAAGCGGCAGAAAACGTTGCTAACTTTCTTAAAAAAGGAAGCTTGGCAGGTGTAGATGGTCGTTTACAAACGCGT
AATTATGAATCAAATGATGGTCGTCGTGTGTATGTAACTGAAGTGGTCGCTGAAAGTGTCCAATTTTTAGAGCCGCGTAA
TGCTAGCGCAGGAAATTCAGGTACGGGTGGTAACAATCAAGGCGGCAATAGTTATAATAACAACAGTTCTTATAGCGGTG
GAAATCAACAGCCACAATCAAATCAAGGAAATGCGTACAATCAAGAGTCTCAACAATCGAGCAAGCCTGCTTTCAGCAAT
CCATTTGCAAGTGATGGCAAGCCAATCGATATTTCTGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
66.12 |
100 |
0.68 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.242 |
100 |
0.596 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
63.208 |
59.551 |
0.376 |
| ssb | Glaesserella parasuis strain SC1401 |
34.021 |
100 |
0.371 |