Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJVC5_RS02790 Genome accession   NZ_CP174607
Coordinates   531025..531471 (-) Length   148 a.a.
NCBI ID   WP_408097863.1    Uniprot ID   -
Organism   Peredibacter sp. HCB2-198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 526025..536471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC5_RS02765 (ACJVC5_02765) gap 526161..527189 (+) 1029 WP_408097857.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ACJVC5_RS02770 (ACJVC5_02770) - 527199..528386 (+) 1188 WP_408097859.1 phosphoglycerate kinase -
  ACJVC5_RS02775 (ACJVC5_02775) tpiA 528511..529242 (+) 732 WP_408097860.1 triose-phosphate isomerase -
  ACJVC5_RS02780 (ACJVC5_02780) secG 529310..529729 (+) 420 WP_408097861.1 preprotein translocase subunit SecG -
  ACJVC5_RS02785 (ACJVC5_02785) - 529775..530920 (-) 1146 WP_408097862.1 HD-GYP domain-containing protein -
  ACJVC5_RS02790 (ACJVC5_02790) ssb 531025..531471 (-) 447 WP_408097863.1 single-stranded DNA-binding protein Machinery gene
  ACJVC5_RS02795 (ACJVC5_02795) - 531667..532044 (-) 378 WP_408097864.1 hypothetical protein -
  ACJVC5_RS02800 (ACJVC5_02800) - 532334..535012 (+) 2679 WP_408097865.1 Tad domain-containing protein -
  ACJVC5_RS02805 (ACJVC5_02805) - 535097..535720 (+) 624 WP_408097866.1 hypothetical protein -
  ACJVC5_RS02810 (ACJVC5_02810) - 535771..536049 (+) 279 WP_321394569.1 glutathione S-transferase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16105.92 Da        Isoelectric Point: 5.1953

>NTDB_id=1077870 ACJVC5_RS02790 WP_408097863.1 531025..531471(-) (ssb) [Peredibacter sp. HCB2-198]
MSVNKVILLGRLGQDPELKYTPGGAAVCNFSLATTEAWTDKSGQKQEKTEWHRVVVWGKLAELCNQYLAKGRQAFLEGRL
QTRSWDDKDGNKRYTTEILASTVQFIGGASAGANQNTGVDSSYAQAPAPAQEYQIASDASFAADDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1077870 ACJVC5_RS02790 WP_408097863.1 531025..531471(-) (ssb) [Peredibacter sp. HCB2-198]
ATGAGCGTAAACAAAGTTATTTTATTAGGTCGTCTTGGTCAGGATCCTGAGCTTAAGTACACTCCAGGCGGCGCCGCTGT
TTGTAACTTCTCTCTAGCTACTACTGAAGCTTGGACTGATAAATCAGGCCAGAAACAAGAAAAAACTGAATGGCACAGAG
TTGTTGTTTGGGGAAAACTTGCTGAGCTTTGTAATCAATATCTGGCAAAAGGCCGTCAGGCTTTCTTAGAAGGTCGTCTT
CAAACTCGTTCTTGGGACGATAAAGATGGTAACAAACGTTACACAACTGAAATCCTAGCTTCGACTGTTCAATTCATTGG
TGGTGCATCTGCTGGTGCTAACCAAAATACTGGTGTTGATTCTTCTTATGCTCAAGCTCCTGCTCCTGCACAAGAATATC
AAATCGCATCTGACGCTTCATTCGCAGCTGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.682

100

0.486
  ssb Vibrio cholerae strain A1552

41.86

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.02

100

0.48
  ssb Glaesserella parasuis strain SC1401

45.669

85.811

0.392

Multiple sequence alignment