Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJKIH_RS07215 Genome accession   NZ_CP174546
Coordinates   1482735..1483256 (-) Length   173 a.a.
NCBI ID   WP_079211933.1    Uniprot ID   -
Organism   Brucella pseudogrignonensis strain VSPL.as     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1477735..1488256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJKIH_RS07190 (ACJKIH_07190) - 1478508..1479677 (-) 1170 WP_407975594.1 carbon-phosphorus lyase complex subunit PhnI -
  ACJKIH_RS07195 (ACJKIH_07195) phnH 1479681..1480292 (-) 612 WP_407975595.1 phosphonate C-P lyase system protein PhnH -
  ACJKIH_RS07200 (ACJKIH_07200) phnG 1480292..1480831 (-) 540 WP_407975596.1 phosphonate C-P lyase system protein PhnG -
  ACJKIH_RS07205 (ACJKIH_07205) phnF 1480964..1481734 (+) 771 WP_407976346.1 phosphonate metabolism transcriptional regulator PhnF -
  ACJKIH_RS07210 (ACJKIH_07210) arsC 1481989..1482402 (+) 414 WP_407975597.1 arsenate reductase (glutaredoxin) -
  ACJKIH_RS07215 (ACJKIH_07215) ssb 1482735..1483256 (-) 522 WP_079211933.1 single-stranded DNA-binding protein Machinery gene
  ACJKIH_RS07220 (ACJKIH_07220) uvrA 1484111..1487035 (+) 2925 WP_407975598.1 excinuclease ABC subunit UvrA -
  ACJKIH_RS07225 (ACJKIH_07225) - 1487065..1487838 (-) 774 WP_105518598.1 phosphodiester glycosidase family protein -
  ACJKIH_RS07230 (ACJKIH_07230) - 1487947..1488222 (-) 276 WP_007875106.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18645.38 Da        Isoelectric Point: 5.3476

>NTDB_id=1077821 ACJKIH_RS07215 WP_079211933.1 1482735..1483256(-) (ssb) [Brucella pseudogrignonensis strain VSPL.as]
MAGSVNKVILVGNLGADPEIRRLNSGDQIANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDGRGEGGGEGRSFGGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGGG
GGFSRDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1077821 ACJKIH_RS07215 WP_079211933.1 1482735..1483256(-) (ssb) [Brucella pseudogrignonensis strain VSPL.as]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCTGAAATTCGTCGCCTCAATTCAGGCGA
TCAGATCGCCAATCTGCGCATTGCAACTTCGGAAAGCTGGCGCGACCGTCAGACCGGCGAACGCAAGGATCGTACCGAAT
GGCACAGCGTTGTCATTTTCAATGAAAATCTTGCCAAGGTTGCCGAGCAGTATCTGAAAAAGGGTGCCAAGGTTTATATC
GAAGGCGCACTGCAGACCCGCAAGTGGCAGGACCAGAACGGCAACGACCGCTACAGCACCGAAATCGTGTTGCAGAAGTT
CCGCGGCGAGCTTCAGATGCTCGATGGCCGTGGTGAAGGCGGCGGCGAAGGTCGCTCATTCGGCGGTGGCGGCGGTGGTA
ATCGCAACCAGATGTCGGATTATTCCGGCGGCGGTGGTGATTTCGGTTCCTCCGGCCCATCCAATCAGGGTGGCGGAGGC
GGTGGTTTCTCCCGCGATCTCGACGACGAAATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.538
  ssb Vibrio cholerae strain A1552

48.588

100

0.497
  ssb Neisseria meningitidis MC58

38.889

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.333

100

0.399

Multiple sequence alignment