Detailed information NTG1077727

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ACJGE4_RS12200
• Genome accession: NZ_CP174519
• Coordinates: 2521310..2521747 (-)
• Length: 145 a.a.
• NCBI ID: WP_043020787.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JD-3
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2516310..2526747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJGE4_RS12150 (ACJGE4_12150)	sinI	2516694..2516867 (+)	174	WP_003153105.1	anti-repressor SinI	Regulator
ACJGE4_RS12155 (ACJGE4_12155)	sinR	2516901..2517236 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
ACJGE4_RS12160 (ACJGE4_12160)	tasA	2517284..2518069 (-)	786	WP_407966252.1	biofilm matrix protein TasA	-
ACJGE4_RS12165 (ACJGE4_12165)	sipW	2518134..2518718 (-)	585	WP_015240205.1	signal peptidase I SipW	-
ACJGE4_RS12170 (ACJGE4_12170)	tapA	2518690..2519361 (-)	672	WP_020954230.1	amyloid fiber anchoring/assembly protein TapA	-
ACJGE4_RS12175 (ACJGE4_12175)	-	2519620..2519949 (+)	330	WP_012117979.1	DUF3889 domain-containing protein	-
ACJGE4_RS12180 (ACJGE4_12180)	-	2519989..2520168 (-)	180	WP_003153093.1	YqzE family protein	-
ACJGE4_RS12185 (ACJGE4_12185)	comGG	2520225..2520602 (-)	378	WP_012117980.1	competence type IV pilus minor pilin ComGG	Machinery gene
ACJGE4_RS12190 (ACJGE4_12190)	comGF	2520603..2521103 (-)	501	WP_257899725.1	competence type IV pilus minor pilin ComGF	-
ACJGE4_RS12195 (ACJGE4_12195)	comGE	2521012..2521326 (-)	315	WP_012117982.1	competence type IV pilus minor pilin ComGE	-
ACJGE4_RS12200 (ACJGE4_12200)	comGD	2521310..2521747 (-)	438	WP_043020787.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACJGE4_RS12205 (ACJGE4_12205)	comGC	2521737..2522003 (-)	267	WP_042635730.1	competence type IV pilus major pilin ComGC	Machinery gene
ACJGE4_RS12210 (ACJGE4_12210)	comGB	2522050..2523087 (-)	1038	WP_094031834.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACJGE4_RS12215 (ACJGE4_12215)	comGA	2523074..2524144 (-)	1071	WP_003153083.1	competence type IV pilus ATPase ComGA	Machinery gene
ACJGE4_RS12220 (ACJGE4_12220)	-	2524338..2525288 (-)	951	WP_007408319.1	magnesium transporter CorA family protein	-
ACJGE4_RS12225 (ACJGE4_12225)	-	2525434..2526735 (+)	1302	WP_021494315.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16271.77 Da
• Isoelectric Point: 10.2475

>NTDB_id=1077727 ACJGE4_RS12200 WP_043020787.1 2521310..2521747(-) (comGD) [Bacillus velezensis strain JD-3]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTELLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=1077727 ACJGE4_RS12200 WP_043020787.1 2521310..2521747(-) (comGD) [Bacillus velezensis strain JD-3]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACTGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTTCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	56.164	100	0.566