Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACJGE4_RS12205 | Genome accession | NZ_CP174519 |
| Coordinates | 2521737..2522003 (-) | Length | 88 a.a. |
| NCBI ID | WP_042635730.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain JD-3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2516737..2527003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJGE4_RS12155 (ACJGE4_12155) | sinR | 2516901..2517236 (+) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| ACJGE4_RS12160 (ACJGE4_12160) | tasA | 2517284..2518069 (-) | 786 | WP_407966252.1 | biofilm matrix protein TasA | - |
| ACJGE4_RS12165 (ACJGE4_12165) | sipW | 2518134..2518718 (-) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| ACJGE4_RS12170 (ACJGE4_12170) | tapA | 2518690..2519361 (-) | 672 | WP_020954230.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACJGE4_RS12175 (ACJGE4_12175) | - | 2519620..2519949 (+) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| ACJGE4_RS12180 (ACJGE4_12180) | - | 2519989..2520168 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| ACJGE4_RS12185 (ACJGE4_12185) | comGG | 2520225..2520602 (-) | 378 | WP_012117980.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACJGE4_RS12190 (ACJGE4_12190) | comGF | 2520603..2521103 (-) | 501 | WP_257899725.1 | competence type IV pilus minor pilin ComGF | - |
| ACJGE4_RS12195 (ACJGE4_12195) | comGE | 2521012..2521326 (-) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| ACJGE4_RS12200 (ACJGE4_12200) | comGD | 2521310..2521747 (-) | 438 | WP_043020787.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACJGE4_RS12205 (ACJGE4_12205) | comGC | 2521737..2522003 (-) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACJGE4_RS12210 (ACJGE4_12210) | comGB | 2522050..2523087 (-) | 1038 | WP_094031834.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACJGE4_RS12215 (ACJGE4_12215) | comGA | 2523074..2524144 (-) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACJGE4_RS12220 (ACJGE4_12220) | - | 2524338..2525288 (-) | 951 | WP_007408319.1 | magnesium transporter CorA family protein | - |
| ACJGE4_RS12225 (ACJGE4_12225) | - | 2525434..2526735 (+) | 1302 | WP_021494315.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9721.32 Da Isoelectric Point: 6.2027
>NTDB_id=1077728 ACJGE4_RS12205 WP_042635730.1 2521737..2522003(-) (comGC) [Bacillus velezensis strain JD-3]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=1077728 ACJGE4_RS12205 WP_042635730.1 2521737..2522003(-) (comGC) [Bacillus velezensis strain JD-3]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
74.648 |
80.682 |
0.602 |