Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACJED4_RS02915 | Genome accession | NZ_CP174518 |
| Coordinates | 592260..592802 (+) | Length | 180 a.a. |
| NCBI ID | WP_007497456.1 | Uniprot ID | A0A5K1N7D0 |
| Organism | Bacillus altitudinis strain G03 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 544465..594248 | 592260..592802 | within | 0 |
Gene organization within MGE regions
Location: 544465..594248
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJED4_RS02685 | dnaX | 544465..546177 (-) | 1713 | WP_008342013.1 | DNA polymerase III subunit gamma/tau | - |
| ACJED4_RS02695 | tadA | 546850..547326 (-) | 477 | WP_008342015.1 | tRNA adenosine(34) deaminase TadA | - |
| ACJED4_RS02700 | - | 547442..547960 (+) | 519 | WP_050827655.1 | isochorismatase family cysteine hydrolase | - |
| ACJED4_RS02705 | - | 548060..549307 (+) | 1248 | WP_235629394.1 | glycoside hydrolase family 18 protein | - |
| ACJED4_RS02710 | - | 549387..550010 (+) | 624 | WP_017366700.1 | deoxynucleoside kinase | - |
| ACJED4_RS02715 | - | 550007..550666 (+) | 660 | WP_024719578.1 | deoxynucleoside kinase | - |
| ACJED4_RS02725 | - | 551136..551468 (-) | 333 | Protein_503 | methyl-accepting chemotaxis protein | - |
| ACJED4_RS02730 | serS | 552065..553339 (-) | 1275 | WP_135227207.1 | serine--tRNA ligase | - |
| ACJED4_RS02735 | pdxT | 553657..554247 (-) | 591 | WP_017359015.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| ACJED4_RS02740 | pdxS | 554267..555151 (-) | 885 | WP_008342033.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| ACJED4_RS02745 | - | 555398..556876 (+) | 1479 | WP_407968960.1 | PLP-dependent aminotransferase family protein | - |
| ACJED4_RS02750 | - | 556919..558244 (-) | 1326 | WP_035391597.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| ACJED4_RS02755 | guaB | 558405..559871 (-) | 1467 | WP_008342039.1 | IMP dehydrogenase | - |
| ACJED4_RS02760 | - | 559993..560961 (+) | 969 | WP_039962409.1 | YaaC family protein | - |
| ACJED4_RS02790 | gyrA | 566355..568859 (-) | 2505 | WP_144626553.1 | DNA gyrase subunit A | - |
| ACJED4_RS02795 | gyrB | 569093..571009 (-) | 1917 | WP_025206585.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ACJED4_RS02800 | remB | 571068..571313 (-) | 246 | WP_008360920.1 | extracellular matrix regulator RemB | - |
| ACJED4_RS02805 | recF | 571331..572443 (-) | 1113 | WP_007497487.1 | DNA replication/repair protein RecF | Machinery gene |
| ACJED4_RS02810 | yaaA | 572460..572675 (-) | 216 | WP_008347598.1 | S4 domain-containing protein YaaA | - |
| ACJED4_RS02815 | dnaN | 572826..573962 (-) | 1137 | WP_008347596.1 | DNA polymerase III subunit beta | - |
| ACJED4_RS02820 | dnaA | 574159..575499 (-) | 1341 | WP_008347594.1 | chromosomal replication initiator protein DnaA | - |
| ACJED4_RS02825 | rpmH | 576120..576254 (+) | 135 | WP_008360908.1 | 50S ribosomal protein L34 | - |
| ACJED4_RS02830 | rnpA | 576333..576692 (+) | 360 | WP_035390150.1 | ribonuclease P protein component | - |
| ACJED4_RS02835 | spoIIIJ | 576851..577633 (+) | 783 | WP_089374159.1 | YidC family membrane integrase SpoIIIJ | - |
| ACJED4_RS02840 | jag | 577630..578253 (+) | 624 | WP_035390148.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| ACJED4_RS02845 | mnmE | 578656..580035 (+) | 1380 | WP_080964592.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| ACJED4_RS02850 | mnmG | 580053..581939 (+) | 1887 | WP_039169033.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| ACJED4_RS02855 | rsmG | 581953..582672 (+) | 720 | WP_007497477.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| ACJED4_RS02860 | noc | 582778..583653 (+) | 876 | WP_024718432.1 | nucleoid occlusion protein | - |
| ACJED4_RS02865 | - | 583782..584615 (+) | 834 | WP_048001990.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| ACJED4_RS02870 | soj | 584851..585612 (+) | 762 | WP_008360890.1 | sporulation initiation inhibitor protein Soj | - |
| ACJED4_RS02875 | - | 585605..586459 (+) | 855 | WP_035704116.1 | ParB/RepB/Spo0J family partition protein | - |
| ACJED4_RS02880 | yyaC | 586485..587111 (-) | 627 | WP_025208343.1 | spore protease YyaC | - |
| ACJED4_RS02885 | - | 587184..588239 (+) | 1056 | WP_080589171.1 | hypothetical protein | - |
| ACJED4_RS02890 | - | 588265..588675 (-) | 411 | WP_007497462.1 | hypothetical protein | - |
| ACJED4_RS02895 | - | 588691..590010 (-) | 1320 | WP_046526895.1 | phage hydrolase | - |
| ACJED4_RS02900 | - | 590305..590511 (+) | 207 | WP_008347561.1 | DUF951 domain-containing protein | - |
| ACJED4_RS02905 | ychF | 590727..591827 (+) | 1101 | WP_007497458.1 | redox-regulated ATPase YchF | - |
| ACJED4_RS02910 | rpsF | 591936..592223 (+) | 288 | WP_008347557.1 | 30S ribosomal protein S6 | - |
| ACJED4_RS02915 | ssbA | 592260..592802 (+) | 543 | WP_007497456.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| ACJED4_RS02920 | rpsR | 592844..593083 (+) | 240 | WP_008347556.1 | 30S ribosomal protein S18 | - |
| ACJED4_RS02925 | - | 593283..594248 (+) | 966 | WP_116306605.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19605.15 Da Isoelectric Point: 4.6109
>NTDB_id=1077629 ACJED4_RS02915 WP_007497456.1 592260..592802(+) (ssbA) [Bacillus altitudinis strain G03]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF
Nucleotide
Download Length: 543 bp
>NTDB_id=1077629 ACJED4_RS02915 WP_007497456.1 592260..592802(+) (ssbA) [Bacillus altitudinis strain G03]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
85.556 |
100 |
0.856 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.376 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
58.889 |
0.378 |
| ssb | Glaesserella parasuis strain SC1401 |
35.714 |
100 |
0.361 |