Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJJVG_RS01350 Genome accession   NZ_CP174503
Coordinates   297920..298450 (+) Length   176 a.a.
NCBI ID   WP_015966315.1    Uniprot ID   -
Organism   Pseudocitrobacter faecalis strain AHC.AZy     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 292920..303450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJVG_RS01335 (ACJJVG_01335) aphA 293637..294350 (+) 714 WP_407731898.1 acid phosphatase AphA -
  ACJJVG_RS01340 (ACJJVG_01340) - 294482..294835 (+) 354 WP_407731899.1 MmcQ/YjbR family DNA-binding protein -
  ACJJVG_RS01345 (ACJJVG_01345) uvrA 294836..297661 (-) 2826 WP_108476022.1 excinuclease ABC subunit UvrA -
  ACJJVG_RS01350 (ACJJVG_01350) ssb 297920..298450 (+) 531 WP_015966315.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACJJVG_RS01355 (ACJJVG_01355) - 298505..298786 (-) 282 WP_407731900.1 YjcB family protein -
  ACJJVG_RS01360 (ACJJVG_01360) soxS 299071..299400 (-) 330 WP_015966313.1 superoxide response transcriptional regulator SoxS -
  ACJJVG_RS01365 (ACJJVG_01365) soxR 299488..299946 (+) 459 WP_108476024.1 redox-sensitive transcriptional activator SoxR -
  ACJJVG_RS01370 (ACJJVG_01370) - 300210..300878 (+) 669 WP_407731901.1 glutathione S-transferase family protein -
  ACJJVG_RS01375 (ACJJVG_01375) - 301295..302644 (+) 1350 WP_108476026.1 NCS2 family permease -
  ACJJVG_RS01380 (ACJJVG_01380) - 302753..303010 (-) 258 WP_407731902.1 DUF1090 family protein -
  ACJJVG_RS01385 (ACJJVG_01385) - 303042..303218 (-) 177 WP_189624390.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18904.94 Da        Isoelectric Point: 5.2456

>NTDB_id=1077419 ACJJVG_RS01350 WP_015966315.1 297920..298450(+) (ssb) [Pseudocitrobacter faecalis strain AHC.AZy]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1077419 ACJJVG_RS01350 WP_015966315.1 297920..298450(+) (ssb) [Pseudocitrobacter faecalis strain AHC.AZy]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTCGCGGAAGTTGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGTTGAAAAATACACCACCGAAGTGGTTGTAAACGTTGG
CGGCACCATGCAGATGTTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGTCAGGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAACAGTCCGCACCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.586

100

0.767
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

47.753

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.483

Multiple sequence alignment