Detailed information NTG1077401

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACJJVB_RS12940
• Genome accession: NZ_CP174502
• Coordinates: 2846655..2847857 (+)
• Length: 400 a.a.
• NCBI ID: WP_176707187.1
• Uniprot ID: -
• Organism: Pseudomonas citronellolis strain ISHS.CFo
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2841655..2852857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJJVB_RS12915 (ACJJVB_12915)	-	2841666..2842946 (-)	1281	WP_043315136.1	OprD family porin	-
ACJJVB_RS12920 (ACJJVB_12920)	-	2843785..2844984 (-)	1200	WP_082996363.1	MFS transporter	-
ACJJVB_RS12925 (ACJJVB_12925)	-	2845254..2845811 (-)	558	WP_267852461.1	putative glycolipid-binding domain-containing protein	-
ACJJVB_RS12930 (ACJJVB_12930)	-	2845808..2846170 (-)	363	WP_009619514.1	MmcQ/YjbR family DNA-binding protein	-
ACJJVB_RS12935 (ACJJVB_12935)	-	2846184..2846462 (-)	279	WP_009619516.1	peptidylprolyl isomerase	-
ACJJVB_RS12940 (ACJJVB_12940)	pilU	2846655..2847857 (+)	1203	WP_176707187.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACJJVB_RS12945 (ACJJVB_12945)	-	2848451..2849407 (+)	957	WP_267852462.1	MBL fold metallo-hydrolase	-
ACJJVB_RS12950 (ACJJVB_12950)	-	2849870..2850142 (+)	273	WP_009619536.1	hypothetical protein	-
ACJJVB_RS12955 (ACJJVB_12955)	-	2850653..2851486 (-)	834	WP_267852463.1	oxidoreductase	-
ACJJVB_RS12960 (ACJJVB_12960)	-	2851580..2852524 (+)	945	WP_267852464.1	AraC family transcriptional regulator	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 43903.04 Da
• Isoelectric Point: 6.0779

>NTDB_id=1077401 ACJJVB_RS12940 WP_176707187.1 2846655..2847857(+) (pilU) [Pseudomonas citronellolis strain ISHS.CFo]
MEIQAMLRILSSQDGSDLYLSTGAPPCAKFNGVLKPLSSEPLKAGDVARIADAIMDEEQKAEFERELEMNLAISVAGVGR
FRINIFKQRNEVSIVARNIKLDIPLFEDLKLPEVLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PIEYVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTQDGKRRAAVEVLLGTATISDIIKRGDFSSIKEIMDKSRALGMQTFDQAL
FDLAVEGAISEEEAVKNADSANNLRLKLKLHRDNPAAAQTQAASAQPATPAAPAVEASSWGLELALEEIKAEDEEDKKGG

Nucleotide

• Length: 1203 bp

>NTDB_id=1077401 ACJJVB_RS12940 WP_176707187.1 2846655..2847857(+) (pilU) [Pseudomonas citronellolis strain ISHS.CFo]
ATGGAAATCCAAGCGATGCTGCGGATCCTGTCCAGCCAGGACGGTTCCGACCTTTACCTTTCCACCGGCGCGCCGCCCTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGCTGTCCAGCGAACCGCTGAAGGCCGGCGACGTGGCGCGCATCGCCGACGCCA
TCATGGACGAGGAACAGAAGGCCGAATTCGAGCGCGAGCTGGAGATGAACCTGGCGATCTCGGTCGCCGGCGTCGGGCGC
TTCCGCATCAACATCTTCAAGCAGCGCAACGAGGTGTCCATCGTCGCGCGCAACATCAAGCTGGACATCCCGCTGTTCGA
AGACCTGAAGCTGCCCGAGGTGCTGCTCAAGGTGGTGATGGAGAAGCGCGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CGGGCAAGTCGACTTCCCTGGCGGCGCTGATCGACCACCGCAACCGCAACAGCGGCGGGCACATCATCACCATCGAGGAC
CCCATCGAATACGTGCACCGGCACCGCAAGTCGATCATCAACCAGCGCGAGGTGGGGGTGGACACCCGCAGCTTCCATGC
CGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAGACCATGGAGCACG
CCCTGGCCTTCGCCGACACCGGGCACCTGGCGATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGGAAGAGCGCCGGCCGCAACTGCTCAACGACCTGGGCAACAACCTCAAGGCCTTCGTCTCCCAGCG
CCTGGTGCGCACCCAGGACGGCAAGCGCCGCGCCGCGGTGGAGGTGCTGCTGGGCACCGCGACCATCAGCGACATCATCA
AGCGCGGCGACTTCAGCTCGATCAAGGAGATCATGGACAAGTCCCGCGCCCTGGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGCGGTGGAAGGCGCGATCAGCGAGGAAGAGGCGGTGAAGAACGCCGACTCGGCGAACAACCTGCGGCTGAA
GCTCAAGCTGCACCGGGACAACCCGGCTGCGGCCCAGACCCAGGCCGCCAGCGCCCAGCCAGCAACCCCGGCCGCGCCCG
CGGTGGAAGCCTCCAGCTGGGGCCTGGAACTGGCCCTGGAAGAGATCAAGGCCGAGGACGAGGAAGACAAGAAGGGCGGT
TGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.695	87.75	0.497
pilU	Acinetobacter baylyi ADP1	53.409	88	0.47
pilU	Vibrio cholerae strain A1552	52.125	88.25	0.46
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.157	95.25	0.382