Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACJMQR_RS19320 Genome accession   NZ_CP174465
Coordinates   4009526..4010863 (+) Length   445 a.a.
NCBI ID   WP_405119013.1    Uniprot ID   -
Organism   Pseudomonas leptonychotis strain TMP19     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4004526..4015863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJMQR_RS19295 (ACJMQR_19295) pgeF 4004658..4005383 (-) 726 WP_405119010.1 peptidoglycan editing factor PgeF -
  ACJMQR_RS19300 (ACJMQR_19300) rluD 4005402..4006376 (-) 975 WP_136663143.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACJMQR_RS19305 (ACJMQR_19305) - 4006524..4007507 (+) 984 WP_136663144.1 outer membrane protein assembly factor BamD -
  ACJMQR_RS19310 (ACJMQR_19310) - 4007705..4007944 (+) 240 WP_405119011.1 PP0621 family protein -
  ACJMQR_RS19315 (ACJMQR_19315) pilS 4007934..4009523 (+) 1590 WP_405119012.1 sensor histidine kinase Regulator
  ACJMQR_RS19320 (ACJMQR_19320) pilR 4009526..4010863 (+) 1338 WP_405119013.1 sigma-54-dependent transcriptional regulator Regulator
  ACJMQR_RS19325 (ACJMQR_19325) thiO 4010932..4012035 (-) 1104 WP_405119014.1 glycine oxidase ThiO -
  ACJMQR_RS19330 (ACJMQR_19330) - 4012155..4012664 (+) 510 WP_405119015.1 GspH/FimT family pseudopilin -
  ACJMQR_RS19335 (ACJMQR_19335) - 4012779..4013279 (+) 501 WP_405119016.1 GspH/FimT family pseudopilin -
  ACJMQR_RS19340 (ACJMQR_19340) pilV 4013288..4013791 (+) 504 WP_405119017.1 type IV pilus modification protein PilV -
  ACJMQR_RS19345 (ACJMQR_19345) - 4013801..4014595 (+) 795 WP_405119018.1 PilW family protein -
  ACJMQR_RS19350 (ACJMQR_19350) - 4014592..4015176 (+) 585 WP_405119019.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49812.24 Da        Isoelectric Point: 5.4693

>NTDB_id=1077176 ACJMQR_RS19320 WP_405119013.1 4009526..4010863(+) (pilR) [Pseudomonas leptonychotis strain TMP19]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLELVQHILQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVAAALRLRSADGEELPVDSRLLGESPPMKTLRKQILKLARSQAPVY
ISGESGSGKELVARLIHEQGSRSEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQELVVDVRILCATHKDLAGEVAAERFRQDLYYRLNVIELRVPALRERREDITLLADIM
LKRLAEGTGLSSAKLDDDALEKLKSYRFPGNVRELENMLERAYTLCEDDRISASDLRLADSSPISENGEANLAQIDNLED
YLEAIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1077176 ACJMQR_RS19320 WP_405119013.1 4009526..4010863(+) (pilR) [Pseudomonas leptonychotis strain TMP19]
ATGACCCGCCAGAGAGCCTTGATCGTCGACGACGAACCCGATATTCGTGAACTTCTGGAGATCACCCTGGGGCGGATGAA
GCTCGACACTCGTAGCGCACGGAACGTCAAAGAGGCCCGAGAATGGCTGGCCAAGGAGCCCTTTGACCTGTGCCTGACCG
ATATGCGCCTGCCCGACGGCACGGGCCTAGAGCTGGTACAGCACATTCTGCAGCGTCATCCACAAGTACCGGTTGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCAATCAATGCACTGAAAGCCGGGGCATTCGACTTTTTGACCAAGCCCGTCGA
CCTCGGGCGCTTGCGCGAACTGGTCGCCGCCGCCTTGCGCCTGCGCAGTGCCGACGGCGAAGAACTGCCGGTGGACAGCC
GCCTGCTCGGCGAGTCGCCGCCAATGAAGACCCTGCGCAAACAAATCCTCAAACTGGCGCGCAGTCAGGCCCCCGTGTAT
ATCAGCGGTGAATCCGGTAGCGGCAAAGAACTGGTAGCGCGCCTGATCCACGAGCAGGGCTCGCGCAGCGAACAACCTTT
CGTGCCGGTCAACTGCGGCGCCATTCCTAGCGAGCTGATGGAGAGTGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAGGACAAGCAGGGGTTATTCCAAGCAGCCAATGGCGGCACTCTATTTCTCGATGAGGTAGCCGACCTGCCG
CTGCCGATGCAAGTCAAACTGCTACGCGCAATTCAAGAAAAAGCGGTGCGCGCCGTCGGCGGTCAGCAGGAGCTGGTGGT
TGATGTGCGTATTCTTTGCGCCACCCACAAAGACCTTGCCGGCGAAGTCGCCGCCGAACGCTTCCGCCAAGATCTTTATT
ACCGCCTCAACGTCATCGAGCTACGCGTACCAGCCCTGCGCGAACGCCGCGAAGACATTACGCTGCTGGCCGACATCATG
CTCAAGCGCCTGGCCGAGGGCACCGGCCTCAGCTCGGCCAAGTTGGACGACGATGCACTGGAAAAGCTCAAAAGCTACCG
CTTCCCGGGTAACGTACGCGAATTGGAGAACATGCTTGAGCGCGCTTACACCCTGTGCGAAGACGACCGCATCTCCGCCA
GCGACCTGCGCCTGGCCGACAGCAGCCCTATCAGTGAGAACGGCGAAGCCAACCTCGCCCAGATTGACAACCTGGAGGAC
TACCTAGAAGCCATCGAGCGCAAGCTGATCATGCAGGCCCTGGAAGAAACTCGCTGGAACCGCACCGCAGCTGCTCAGCG
TTTAGGCCTAAGCTTTCGCTCAATGCGCTATCGACTAAAGAAACTTGGTATCGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.067

100

0.861
  pilR Acinetobacter baumannii strain A118

49.455

100

0.51
  luxO Vibrio cholerae strain A1552

37.668

100

0.378

Multiple sequence alignment