Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACJMQR_RS19315 Genome accession   NZ_CP174465
Coordinates   4007934..4009523 (+) Length   529 a.a.
NCBI ID   WP_405119012.1    Uniprot ID   -
Organism   Pseudomonas leptonychotis strain TMP19     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4002934..4014523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJMQR_RS19295 (ACJMQR_19295) pgeF 4004658..4005383 (-) 726 WP_405119010.1 peptidoglycan editing factor PgeF -
  ACJMQR_RS19300 (ACJMQR_19300) rluD 4005402..4006376 (-) 975 WP_136663143.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACJMQR_RS19305 (ACJMQR_19305) - 4006524..4007507 (+) 984 WP_136663144.1 outer membrane protein assembly factor BamD -
  ACJMQR_RS19310 (ACJMQR_19310) - 4007705..4007944 (+) 240 WP_405119011.1 PP0621 family protein -
  ACJMQR_RS19315 (ACJMQR_19315) pilS 4007934..4009523 (+) 1590 WP_405119012.1 sensor histidine kinase Regulator
  ACJMQR_RS19320 (ACJMQR_19320) pilR 4009526..4010863 (+) 1338 WP_405119013.1 sigma-54-dependent transcriptional regulator Regulator
  ACJMQR_RS19325 (ACJMQR_19325) thiO 4010932..4012035 (-) 1104 WP_405119014.1 glycine oxidase ThiO -
  ACJMQR_RS19330 (ACJMQR_19330) - 4012155..4012664 (+) 510 WP_405119015.1 GspH/FimT family pseudopilin -
  ACJMQR_RS19335 (ACJMQR_19335) - 4012779..4013279 (+) 501 WP_405119016.1 GspH/FimT family pseudopilin -
  ACJMQR_RS19340 (ACJMQR_19340) pilV 4013288..4013791 (+) 504 WP_405119017.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58540.66 Da        Isoelectric Point: 8.4749

>NTDB_id=1077175 ACJMQR_RS19315 WP_405119012.1 4007934..4009523(+) (pilS) [Pseudomonas leptonychotis strain TMP19]
MSTEFNLSGEQSWRILRLYHLYRLIIGLALALLVSSNLHTDLLEMANPELFRNGSWLYLALNVLIIATVRRPKRLAQIFS
LALVDVILLAGLFYAGGGTPSGIGNLLIVAVAISNILLRGRIGLLIAAVAAIGMIYLTFFLSLSRPAATAQYVQVGAFGA
LCFAAALFVQGLTRRLQASESLAEQRAADVANLEALNGLILQRMRTGILVLDELHRVLLANQGANHLLGHADLTGKILDP
HCPELIKRMQQWSHNPSLRPSSLQAAPDGRVLQPSFIALLRGEYKHTLIFLDDISQIAQQAQQLKLASLGRLTAGIAHEI
RNPLGAISHAAQLLQESEDLEGPDLRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRGSAAPGQ
TLHLQTSSGSIQTRMDPHQLTQVLSNLVENGLRYSAQKNKQGQVWLNLFRDPDSELPVLEVLDDGPGVAEEQLHHLFEPF
YTTENKGTGLGLYISRELCESNQARLDYKLREGGGSCLRITFAHPRKLS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1077175 ACJMQR_RS19315 WP_405119012.1 4007934..4009523(+) (pilS) [Pseudomonas leptonychotis strain TMP19]
GTGAGCACTGAATTCAACCTAAGCGGGGAGCAAAGCTGGCGAATCCTGCGCCTCTACCACCTGTACCGTTTGATTATTGG
CCTCGCCTTGGCACTGCTGGTATCCAGCAACCTGCACACTGATCTACTTGAGATGGCTAACCCGGAGCTATTTCGCAACG
GCAGCTGGCTGTATCTAGCGCTTAATGTCCTGATCATCGCCACAGTACGTAGACCCAAACGCCTGGCGCAGATTTTCAGT
CTGGCACTGGTCGACGTCATTCTACTCGCCGGCCTGTTCTATGCCGGTGGCGGTACGCCAAGCGGCATAGGCAACTTACT
GATTGTCGCAGTGGCTATCAGCAATATTCTGCTGCGTGGGCGTATCGGCCTACTGATTGCCGCTGTCGCCGCAATCGGCA
TGATTTACCTCACCTTCTTCCTTAGCCTCAGCCGCCCTGCAGCTACAGCCCAGTACGTTCAGGTCGGCGCATTTGGCGCA
CTGTGCTTCGCTGCCGCCTTGTTCGTGCAAGGCCTAACCCGACGCCTGCAAGCCAGCGAAAGCCTTGCAGAGCAGCGTGC
CGCTGATGTGGCCAATCTAGAGGCATTAAACGGCCTGATCCTGCAGCGCATGCGTACAGGCATTCTGGTTTTGGATGAAC
TGCATCGCGTACTGCTGGCCAACCAAGGTGCCAATCACCTGCTAGGGCATGCCGACCTAACGGGCAAAATCCTCGACCCG
CACTGCCCCGAATTGATCAAGCGCATGCAGCAGTGGTCGCACAACCCAAGTTTGCGCCCTAGCAGCCTGCAAGCGGCACC
CGATGGCCGTGTATTACAACCGAGCTTTATTGCCCTGCTACGTGGCGAGTACAAACACACACTGATCTTTCTCGACGACA
TCTCACAAATCGCCCAACAAGCGCAGCAACTCAAGCTCGCCTCTCTCGGCCGCCTGACGGCAGGTATCGCCCACGAAATC
CGTAACCCCCTGGGTGCCATCAGTCACGCCGCGCAGCTGCTGCAAGAGTCAGAAGATCTGGAGGGGCCAGACCTGCGCCT
GGCACAGATCATCCAGGATCACTCACGGCGCATGAACCTGGTCATCGAGAACGTTTTGCAGCTCTCGCGGCGCCGTCAAG
CCGAGCCGCAACTGCTTGACCTGAAATACTGGCTGCACCGTTTTGCTAGCGAGTTTCGTGGCAGTGCAGCACCGGGCCAG
ACCCTGCATCTACAAACCAGCAGCGGTAGCATTCAGACGCGAATGGACCCCCATCAGCTCACCCAGGTATTAAGCAACTT
GGTTGAAAACGGCCTGCGCTATAGCGCGCAGAAGAACAAACAAGGGCAAGTTTGGCTGAATCTATTCCGCGACCCTGACA
GCGAGCTGCCCGTGCTTGAGGTGTTGGACGATGGCCCTGGCGTCGCCGAGGAACAACTGCACCACTTGTTTGAACCCTTC
TACACCACAGAAAACAAAGGTACCGGCTTAGGCTTGTATATTTCCCGCGAGCTGTGCGAAAGCAATCAGGCGCGTCTTGA
CTATAAACTTCGTGAAGGTGGCGGCAGTTGTCTGCGCATCACCTTCGCCCACCCGCGAAAACTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.424

99.811

0.673

Multiple sequence alignment