Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACIU4M_RS02160 Genome accession   NZ_CP174375
Coordinates   364108..364401 (-) Length   97 a.a.
NCBI ID   WP_024718841.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359108..369401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS02110 (ACIU4M_02110) sinR 359273..359608 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  ACIU4M_RS02115 (ACIU4M_02115) tasA 359676..360476 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  ACIU4M_RS02120 (ACIU4M_02120) sipW 360535..361107 (-) 573 WP_017357979.1 signal peptidase I SipW -
  ACIU4M_RS02125 (ACIU4M_02125) tapA 361157..361684 (-) 528 WP_407708572.1 amyloid fiber anchoring/assembly protein TapA -
  ACIU4M_RS02130 (ACIU4M_02130) - 361937..362263 (+) 327 WP_025207617.1 DUF3889 domain-containing protein -
  ACIU4M_RS02135 (ACIU4M_02135) - 362297..362491 (-) 195 WP_327871871.1 YqzE family protein -
  ACIU4M_RS02140 (ACIU4M_02140) - 362552..362935 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  ACIU4M_RS02145 (ACIU4M_02145) comGF 362932..363429 (-) 498 WP_039166031.1 competence type IV pilus minor pilin ComGF -
  ACIU4M_RS02150 (ACIU4M_02150) comGE 363371..363685 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  ACIU4M_RS02155 (ACIU4M_02155) comGD 363669..364115 (-) 447 WP_039166035.1 competence type IV pilus minor pilin ComGD -
  ACIU4M_RS02160 (ACIU4M_02160) comGC 364108..364401 (-) 294 WP_024718841.1 competence type IV pilus major pilin ComGC Machinery gene
  ACIU4M_RS02165 (ACIU4M_02165) comGB 364418..365458 (-) 1041 WP_396466826.1 competence type IV pilus assembly protein ComGB -
  ACIU4M_RS02170 (ACIU4M_02170) comGA 365439..366509 (-) 1071 WP_327871870.1 competence type IV pilus ATPase ComGA Machinery gene
  ACIU4M_RS02175 (ACIU4M_02175) - 366968..367840 (-) 873 WP_035390819.1 STAS domain-containing protein -
  ACIU4M_RS02185 (ACIU4M_02185) - 368066..368446 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACIU4M_RS02190 (ACIU4M_02190) - 368659..368901 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10714.59 Da        Isoelectric Point: 6.7081

>NTDB_id=1076951 ACIU4M_RS02160 WP_024718841.1 364108..364401(-) (comGC) [Bacillus altitudinis strain SF5]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLS
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1076951 ACIU4M_RS02160 WP_024718841.1 364108..364401(-) (comGC) [Bacillus altitudinis strain SF5]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTATCT
TGTCCAAATGGAAAGGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

40.217

94.845

0.381
  comGC Staphylococcus aureus N315

40.217

94.845

0.381

Multiple sequence alignment