Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACIU4M_RS02110 Genome accession   NZ_CP174375
Coordinates   359273..359608 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 354273..364608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS02090 (ACIU4M_02090) gcvT 354751..355848 (-) 1098 WP_217815933.1 glycine cleavage system aminomethyltransferase GcvT -
  ACIU4M_RS02095 (ACIU4M_02095) - 356408..358078 (+) 1671 WP_073413952.1 DEAD/DEAH box helicase -
  ACIU4M_RS02100 (ACIU4M_02100) - 358093..358890 (+) 798 WP_017367588.1 YqhG family protein -
  ACIU4M_RS02105 (ACIU4M_02105) - 359075..359239 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  ACIU4M_RS02110 (ACIU4M_02110) sinR 359273..359608 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  ACIU4M_RS02115 (ACIU4M_02115) tasA 359676..360476 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  ACIU4M_RS02120 (ACIU4M_02120) sipW 360535..361107 (-) 573 WP_017357979.1 signal peptidase I SipW -
  ACIU4M_RS02125 (ACIU4M_02125) tapA 361157..361684 (-) 528 WP_407708572.1 amyloid fiber anchoring/assembly protein TapA -
  ACIU4M_RS02130 (ACIU4M_02130) - 361937..362263 (+) 327 WP_025207617.1 DUF3889 domain-containing protein -
  ACIU4M_RS02135 (ACIU4M_02135) - 362297..362491 (-) 195 WP_327871871.1 YqzE family protein -
  ACIU4M_RS02140 (ACIU4M_02140) - 362552..362935 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  ACIU4M_RS02145 (ACIU4M_02145) comGF 362932..363429 (-) 498 WP_039166031.1 competence type IV pilus minor pilin ComGF -
  ACIU4M_RS02150 (ACIU4M_02150) comGE 363371..363685 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  ACIU4M_RS02155 (ACIU4M_02155) comGD 363669..364115 (-) 447 WP_039166035.1 competence type IV pilus minor pilin ComGD -
  ACIU4M_RS02160 (ACIU4M_02160) comGC 364108..364401 (-) 294 WP_024718841.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=1076950 ACIU4M_RS02110 WP_017357978.1 359273..359608(+) (sinR) [Bacillus altitudinis strain SF5]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1076950 ACIU4M_RS02110 WP_017357978.1 359273..359608(+) (sinR) [Bacillus altitudinis strain SF5]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment