Detailed information NTG1076863

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ACJGEZ_RS05555
• Genome accession: NZ_CP174352
• Coordinates: 1156473..1157531 (+)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain Zhe173
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1151473..1162531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJGEZ_RS05545 (ACJGEZ_05545)	-	1152868..1153518 (-)	651	WP_011407794.1	hypothetical protein	-
ACJGEZ_RS05550 (ACJGEZ_05550)	-	1153828..1156257 (-)	2430	WP_011257992.1	penicillin-binding protein 1A	-
ACJGEZ_RS05555 (ACJGEZ_05555)	comM	1156473..1157531 (+)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
ACJGEZ_RS05560 (ACJGEZ_05560)	-	1157531..1158289 (+)	759	WP_011257994.1	PilN domain-containing protein	-
ACJGEZ_RS05565 (ACJGEZ_05565)	-	1158286..1158951 (+)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
ACJGEZ_RS05570 (ACJGEZ_05570)	-	1158948..1159481 (+)	534	WP_011257996.1	pilus assembly protein PilP	-
ACJGEZ_RS05575 (ACJGEZ_05575)	-	1159501..1161450 (+)	1950	WP_011407796.1	type IV pilus secretin PilQ	-
ACJGEZ_RS05580 (ACJGEZ_05580)	-	1162048..1162049 (-)	2	WP_094187763.1	IS5 family transposase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=1076863 ACJGEZ_RS05555 WP_011407795.1 1156473..1157531(+) (comM) [Xanthomonas oryzae pv. oryzae strain Zhe173]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1076863 ACJGEZ_RS05555 WP_011407795.1 1156473..1157531(+) (comM) [Xanthomonas oryzae pv. oryzae strain Zhe173]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477