Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACJA3J_RS21390 Genome accession   NZ_CP174345
Coordinates   4280981..4281469 (-) Length   162 a.a.
NCBI ID   WP_115822995.1    Uniprot ID   A0A3E0JA49
Organism   Halobacillus sp. SY10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4275981..4286469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA3J_RS21370 (ACJA3J_21370) - 4277153..4277782 (+) 630 WP_406945216.1 YczE/YyaS/YitT family protein -
  ACJA3J_RS21375 (ACJA3J_21375) hmpA 4277961..4279181 (-) 1221 WP_406945217.1 NO-inducible flavohemoprotein -
  ACJA3J_RS21380 (ACJA3J_21380) - 4279365..4279802 (+) 438 WP_089650705.1 Rrf2 family transcriptional regulator -
  ACJA3J_RS21385 (ACJA3J_21385) rpsR 4280732..4280959 (-) 228 WP_089650706.1 30S ribosomal protein S18 -
  ACJA3J_RS21390 (ACJA3J_21390) ssbA 4280981..4281469 (-) 489 WP_115822995.1 single-stranded DNA-binding protein Machinery gene
  ACJA3J_RS21395 (ACJA3J_21395) rpsF 4281482..4281775 (-) 294 WP_089650708.1 30S ribosomal protein S6 -
  ACJA3J_RS21400 (ACJA3J_21400) ychF 4281914..4283011 (-) 1098 WP_406945218.1 redox-regulated ATPase YchF -
  ACJA3J_RS21405 (ACJA3J_21405) - 4283531..4283725 (-) 195 WP_089650710.1 DUF951 domain-containing protein -
  ACJA3J_RS21410 (ACJA3J_21410) - 4283725..4284651 (-) 927 WP_406945219.1 mechanosensitive ion channel family protein -
  ACJA3J_RS21415 (ACJA3J_21415) - 4284704..4285723 (-) 1020 WP_406945220.1 hypothetical protein -
  ACJA3J_RS21420 (ACJA3J_21420) yyaC 4285813..4286439 (+) 627 WP_406945221.1 spore protease YyaC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17584.13 Da        Isoelectric Point: 4.5704

>NTDB_id=1076798 ACJA3J_RS21390 WP_115822995.1 4280981..4281469(-) (ssbA) [Halobacillus sp. SY10]
MLNRVVLAGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNNSGDRDADFINCVVWRRAAENLANFMSKGSLVGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGASQGGGNRGGSGFQPNQNQQPSGNNFGSNNNNQRNDDPFADNGEPIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1076798 ACJA3J_RS21390 WP_115822995.1 4280981..4281469(-) (ssbA) [Halobacillus sp. SY10]
ATGTTAAATCGTGTCGTATTAGCCGGCAGATTGACGAAGGATCCTGATTTACGCTATACGCCAAACGGAGTAGCTGTCGC
CAACTTTACAATCGCCGTAAACCGTCCTTTTTCCAACAACTCAGGAGATCGCGATGCCGATTTCATCAACTGTGTCGTTT
GGAGAAGAGCGGCTGAGAACTTGGCTAACTTTATGAGTAAAGGTAGTCTTGTCGGTGTTGACGGACGCCTACAGTCCCGC
AGCTTCGATAACCAAGAAGGTAAGCGTGTATTTGTAACAGAAGTTGTTGCAGATAGCGTGCAGTTCCTAGAGTCCAAAGG
TGCTTCCCAAGGCGGGGGTAACCGTGGAGGTTCAGGATTCCAACCAAATCAGAATCAACAACCATCAGGAAACAACTTCG
GTTCTAATAACAACAACCAACGAAATGATGACCCATTCGCAGATAATGGGGAACCAATCGATATATCAGATGATGATTTA
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E0JA49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.116

100

0.691
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.432

0.395
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.37

Multiple sequence alignment