Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   ACJEHG_RS06395 Genome accession   NZ_CP174228
Coordinates   1465340..1465789 (+) Length   149 a.a.
NCBI ID   WP_027266708.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF638     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1460340..1470789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHG_RS06385 (ACJEHG_06385) - 1461294..1461806 (+) 513 WP_027266710.1 pilus assembly protein -
  ACJEHG_RS06390 (ACJEHG_06390) - 1461819..1465328 (+) 3510 WP_050512877.1 pilus assembly protein -
  ACJEHG_RS06395 (ACJEHG_06395) pilE 1465340..1465789 (+) 450 WP_027266708.1 type IV pilin protein Machinery gene
  ACJEHG_RS06400 (ACJEHG_06400) comEC 1465867..1468074 (+) 2208 WP_047661654.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACJEHG_RS06405 (ACJEHG_06405) - 1468102..1469409 (-) 1308 WP_047661652.1 tetratricopeptide repeat protein -
  ACJEHG_RS06410 (ACJEHG_06410) - 1469610..1469987 (-) 378 WP_047661651.1 hypothetical protein -
  ACJEHG_RS06415 (ACJEHG_06415) - 1470125..1470517 (+) 393 WP_047661649.1 hypothetical protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16292.48 Da        Isoelectric Point: 8.1177

>NTDB_id=1075802 ACJEHG_RS06395 WP_027266708.1 1465340..1465789(+) (pilE) [Legionella pneumophila strain SPF638]
MRSNGHFMKNKHMRQSAFTLVEVLISMVIVGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1075802 ACJEHG_RS06395 WP_027266708.1 1465340..1465789(+) (pilE) [Legionella pneumophila strain SPF638]
ATGCGTAGCAATGGACATTTTATGAAGAATAAGCATATGAGACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTGTGGGAATTCTGGTTTCCATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCGGATGCGC
ATGCCACATTGACACAAGATCAAATCATTTTAGAACGCTGTTATTCACAGAATTTTTCTTATGCTGCGGCGTGTGGGGCC
TTACCAGCATTTCCTCAAACAACTCCGAACGGGTACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACCGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCCAATGCGCAACCAGAATGCTGGAATCCCGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

95.302

100

0.953

  pilE Legionella pneumophila strain ERS1305867

95.302

100

0.953


Multiple sequence alignment