Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACJEHG_RS06400 Genome accession   NZ_CP174228
Coordinates   1465867..1468074 (+) Length   735 a.a.
NCBI ID   WP_047661654.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF638     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460867..1473074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHG_RS06385 (ACJEHG_06385) - 1461294..1461806 (+) 513 WP_027266710.1 pilus assembly protein -
  ACJEHG_RS06390 (ACJEHG_06390) - 1461819..1465328 (+) 3510 WP_050512877.1 pilus assembly protein -
  ACJEHG_RS06395 (ACJEHG_06395) pilE 1465340..1465789 (+) 450 WP_027266708.1 type IV pilin protein Machinery gene
  ACJEHG_RS06400 (ACJEHG_06400) comEC 1465867..1468074 (+) 2208 WP_047661654.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACJEHG_RS06405 (ACJEHG_06405) - 1468102..1469409 (-) 1308 WP_047661652.1 tetratricopeptide repeat protein -
  ACJEHG_RS06410 (ACJEHG_06410) - 1469610..1469987 (-) 378 WP_047661651.1 hypothetical protein -
  ACJEHG_RS06415 (ACJEHG_06415) - 1470125..1470517 (+) 393 WP_047661649.1 hypothetical protein -
  ACJEHG_RS06420 (ACJEHG_06420) - 1470642..1472570 (+) 1929 WP_047661647.1 hypothetical protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 83276.84 Da        Isoelectric Point: 9.7647

>NTDB_id=1075803 ACJEHG_RS06400 WP_047661654.1 1465867..1468074(+) (comEC) [Legionella pneumophila strain SPF638]
MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGMPETQVITQAQLEGTIASIPMQ
RPNKTQFHFAIEKINNNPAQGLIQLNWYNNPPVLRAGQRWQLSVKLKKPRNFHNPGGFNYVRYLAARHIHWAGYIRYGNN
KLISNQPSSFSWLTLREKIRDALTKLAPDTETAGIIEALTLNVTHHISSDHWSLFRRTGTIHLFGISGEHIALVSGIFFI
VIRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE
PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMITSPFHWSWIFMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL
FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKKIDKIVISHPDKDHKGG
LNSLEKEMQVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE
YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAGIKL
PASGKINKPTCMQAE

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=1075803 ACJEHG_RS06400 WP_047661654.1 1465867..1468074(+) (comEC) [Legionella pneumophila strain SPF638]
ATGGAAATTTTTTGCTTTTTAATAGGCGTACTTTATGCCTATACCTATAATATTTATCTAACTATTGCGATTCCTTTACT
CTTTTATATCACACCAAGATATCCAATTGTCCTGTTCTTCATCGCCGGGTGTGGCTTTGCCCTAATTCATCAGTGGATTG
TATCTCCCAAGGGCATGCCTGAGACGCAAGTAATCACTCAAGCACAATTGGAAGGAACTATTGCTTCCATCCCCATGCAA
CGTCCTAACAAAACCCAATTCCATTTTGCAATTGAAAAAATTAATAATAACCCTGCTCAAGGCTTGATCCAATTAAACTG
GTATAACAACCCCCCTGTGCTACGAGCCGGTCAGCGATGGCAACTTTCAGTGAAACTAAAAAAGCCTCGTAACTTCCACA
ACCCGGGAGGTTTTAATTATGTACGTTACCTGGCGGCTCGTCATATCCATTGGGCCGGTTATATTCGTTATGGGAATAAT
AAGCTAATTAGCAATCAACCCTCTTCTTTCAGTTGGTTAACACTACGCGAAAAAATAAGGGATGCTTTGACAAAACTGGC
ACCGGATACAGAAACCGCAGGCATCATCGAAGCATTAACGTTAAATGTTACTCACCATATCAGTTCAGATCATTGGAGTT
TGTTCCGAAGAACGGGAACAATACATTTATTTGGGATATCAGGAGAGCACATCGCTCTGGTATCTGGCATTTTCTTTATC
GTGATAAGGTGGATTTGGTCGATTAACTATCGTTGTTGTTTGTTCTTACCGGCCAATACCATAGCGAGTATCGGTGGATT
ACTGGCTGCCTTGCCCTATGCTTTTTTAGCCGGGTTTGAGCCTCCTGTACAGCGCGCTTTGATTGGTTGTGTACTTTACA
CAATATACGCCATTGGAAAACAACGTTTTACTCCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGTATTGAG
CCCCATGCCGTATTCCTGCAAGGTTTTTATTTTTCATTTCTTGCTGTGGCCTGTCTTCTATTGACTCATCAACGCTGGCC
ACTGAAAAATTATAAAAAAACACTGGCATTACAATTAAGCTGCCTCATTGGATTAATGCCCTTGACTCTCCATTGGTATT
CCTATGGTTCTATCAATGGATTTCTTGCCAATTTATTCGCCATACCTTTAGTCAGTTTTCTGATAGTACCCTTGGCTTTA
ATGACTATGATAACGAGTCCATTTCATTGGTCCTGGATATTTATGAAACCATTGGCGTGGCTTGTTGCCCTGTTACTGCA
AGGACTAACGTATGTTGAGCAAATAGCTGGGATCAATATCACCTGGTCCATCACCTCGGTAACAATGATGCTCGCTATGA
CAGCAGGTCTGTTTTTAAGGGTATTATTACCTGTCAAGCCATTCAAACACTTGGCTATCCTTTGGATTATCCTTCCCTTA
TTTCCACCTCGTACTGCAATTTATCCAGGGGAAGCATTAATTAATATTTTGGATGTTGGGCAAGGACTTGCCGTTGCGAT
ACAAACGCAACATCATGTTTTACTCTACGATACGGGAGATTCCTATTTTCAGGGGAGTGATTTAGGGCAAATGGCGATAA
TCCCCTTTTTCAGGTCAATTGGAATAAAAAAAATTGACAAAATAGTAATAAGCCATCCCGATAAAGATCATAAGGGCGGA
TTAAATTCCCTTGAAAAAGAGATGCAAGTCAATCAATTAATAGTGAATGATCCCTATTTTTATAAACGTGGAAGTAATTG
TCATTCATACCCGCAATGGCAATGGGATGGGGTGAGTTTTCGTTTTTTACCCATCAGGGAATCTTTCAATAAAAAAAATA
ATAATTCTTGTATCTTACAGGTAAGTAATTCTGCTGGCAGGGTTTTGTTAACGGGAGATATTGAAAAAGCAGCTGAGGAG
TACCTGGTAAGAAACTACGGCAGTCAGCTGGCATCCGAAATTTTAGTTGTGCCTCATCATGGGAGCAAAACGTCTTCATC
CTATCGATTTTTGCTGGAAGTAAACCCGCTTTATGCCATTGCATCCCTAGGATTTGATAATCGCTTCAAATTTCCACATT
CTAAAACTTTACAAAGCATGAAAACATTAGGTATCACTTTTTTTAGAACAGACGAATGTGGAATGGCAGGAATCAAACTA
CCTGCGTCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(199-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-158)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-578)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

98.093

99.864

0.98
  comEC Legionella pneumophila strain ERS1305867

96.19

100

0.962

Multiple sequence alignment