Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilM   Type   Machinery gene
Locus tag   ACJEHS_RS14145 Genome accession   NZ_CP174225
Coordinates   3165572..3166636 (+) Length   354 a.a.
NCBI ID   WP_010946662.1    Uniprot ID   Q5ZX06
Organism   Legionella pneumophila strain SPF641     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3160572..3171636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHS_RS14135 (ACJEHS_14135) - 3161609..3163993 (-) 2385 WP_010946660.1 penicillin-binding protein 1A -
  ACJEHS_RS14140 (ACJEHS_14140) ravI 3164145..3165155 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  ACJEHS_RS14145 (ACJEHS_14145) pilM 3165572..3166636 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  ACJEHS_RS14150 (ACJEHS_14150) pilN 3166640..3167188 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  ACJEHS_RS14155 (ACJEHS_14155) pilO 3167202..3167801 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJEHS_RS14160 (ACJEHS_14160) pilP 3167798..3168385 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  ACJEHS_RS14165 (ACJEHS_14165) pilQ 3168389..3170485 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  ACJEHS_RS14170 (ACJEHS_14170) aroK 3170931..3171458 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence


Protein


Download         Length: 354 a.a.        Molecular weight: 38732.71 Da        Isoelectric Point: 5.0367

>NTDB_id=1075691 ACJEHS_RS14145 WP_010946662.1 3165572..3166636(+) (pilM) [Legionella pneumophila strain SPF641]
MLKLLKPKHRSILGIDISSSAVKILEISGSGEDICVEGYGREEIPASALEGNIIKDVDVVANCIKKLVERLKFTSKNVAL
AVPDSAVISKVVQINEGLTDLEMEELVVIEADKYIPYPIDEINLDFEVLGHSAKSSSLLDVLIVASRAENVNTRVEAAHR
AGLEPKVVDVESYAVERSVQQIAQELPASGQDKIVAIVDIGANYTHLFVLHGMRLIFSREEKFGGMQLVEAIAEHYHMNL
EQAIALKNQGKLPEDYESAVLEPFKDMILLQIKRTLQFFYSTSQHGFVDHILLAGGMARQSGLAALIQEQLGVTTTVANP
LSHMSFGKKVNLDVINSDAPTLMVACGLALRHVE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1075691 ACJEHS_RS14145 WP_010946662.1 3165572..3166636(+) (pilM) [Legionella pneumophila strain SPF641]
GTGCTCAAATTGCTTAAACCTAAGCATCGTTCAATTCTTGGCATTGACATCAGTTCTTCCGCAGTGAAAATCCTGGAAAT
ATCAGGTTCCGGAGAGGACATTTGTGTTGAAGGATATGGTCGCGAAGAAATACCTGCCTCTGCCTTAGAAGGAAATATAA
TTAAGGATGTCGATGTAGTAGCGAATTGTATCAAAAAATTAGTAGAAAGATTGAAGTTTACATCTAAAAATGTGGCATTG
GCTGTACCTGATTCGGCTGTTATCAGTAAAGTAGTGCAAATTAATGAAGGGTTAACTGACCTTGAAATGGAAGAGCTTGT
CGTTATTGAGGCGGATAAGTACATTCCTTACCCAATAGATGAAATAAACCTGGATTTTGAAGTGTTAGGCCATTCAGCCA
AGAGCTCATCACTGCTTGATGTTTTAATCGTGGCATCAAGGGCAGAAAACGTTAATACCCGTGTTGAAGCAGCCCATAGA
GCAGGGCTGGAACCCAAAGTTGTTGACGTTGAGTCTTATGCAGTAGAGCGTTCAGTACAACAAATCGCGCAAGAATTACC
AGCAAGTGGGCAAGACAAAATTGTTGCAATAGTAGATATTGGAGCCAATTATACTCACTTATTTGTTTTGCATGGTATGC
GACTAATCTTTTCAAGAGAAGAAAAATTTGGAGGTATGCAACTTGTTGAAGCTATTGCAGAACACTATCATATGAATTTG
GAGCAGGCTATTGCCCTAAAAAATCAGGGTAAACTACCGGAGGACTACGAATCTGCTGTATTAGAACCTTTTAAGGACAT
GATTCTTTTGCAGATCAAACGTACTTTGCAGTTTTTTTATTCAACCAGTCAACATGGATTTGTAGACCATATTTTATTGG
CGGGAGGAATGGCAAGGCAATCAGGATTGGCAGCGCTTATTCAAGAACAGTTAGGAGTGACTACTACAGTGGCAAATCCA
CTATCCCATATGTCTTTTGGTAAAAAAGTGAATTTGGATGTGATTAACAGTGATGCGCCTACACTGATGGTGGCTTGTGG
GTTGGCTTTGAGGCATGTCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZX06

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

99.435

100

0.994

  comM Acinetobacter nosocomialis M2

42.817

100

0.429

  pilM Acinetobacter baumannii D1279779

42.535

100

0.427

  comM Acinetobacter baylyi ADP1

41.457

100

0.418


Multiple sequence alignment