Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AABJ90_RS00125 Genome accession   NZ_AP028964
Coordinates   25995..26513 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 20995..31513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS00105 (BsubNA05_00210) yyzM 22069..22275 (+) 207 WP_003226838.1 DUF951 family protein -
  AABJ90_RS00110 (BsubNA05_00220) yyaE 22326..24329 (+) 2004 WP_338382304.1 molybdopterin-dependent oxidoreductase -
  AABJ90_RS00115 (BsubNA05_00230) ychF 24456..25556 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  AABJ90_RS00120 (BsubNA05_00240) rpsF 25667..25954 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  AABJ90_RS00125 (BsubNA05_00250) ssbA 25995..26513 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AABJ90_RS00130 (BsubNA05_00260) rpsR 26557..26796 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  AABJ90_RS00135 (BsubNA05_00270) xth 26858..27616 (+) 759 WP_038429969.1 exodeoxyribonuclease III -
  AABJ90_RS00140 (BsubNA05_00280) ccpB 27675..28610 (+) 936 WP_338382306.1 transcriptional regulator CcpB -
  AABJ90_RS00145 (BsubNA05_00290) yyaH 28666..29046 (+) 381 WP_338382307.1 VOC family protein -
  AABJ90_RS00150 (BsubNA05_00300) maa 29062..29616 (+) 555 WP_015250785.1 sugar O-acetyltransferase -
  AABJ90_RS00155 (BsubNA05_00310) yyaJ 29650..31005 (-) 1356 WP_029318525.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=107550 AABJ90_RS00125 WP_003219228.1 25995..26513(+) (ssbA) [Bacillus subtilis strain NA05 = NBRC 116153]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=107550 AABJ90_RS00125 WP_003219228.1 25995..26513(+) (ssbA) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment