Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACJEHQ_RS12475 Genome accession   NZ_CP174217
Coordinates   2777158..2778243 (-) Length   361 a.a.
NCBI ID   WP_010948297.1    Uniprot ID   A0AAN5SZF3
Organism   Legionella pneumophila strain SPF651     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2772158..2783243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHQ_RS12460 (ACJEHQ_12460) - 2772298..2774271 (+) 1974 WP_010948300.1 acyltransferase family protein -
  ACJEHQ_RS12465 (ACJEHQ_12465) topA 2774373..2776652 (-) 2280 WP_010948299.1 type I DNA topoisomerase -
  ACJEHQ_RS12470 (ACJEHQ_12470) - 2776731..2777168 (-) 438 WP_015444006.1 DUF494 family protein -
  ACJEHQ_RS12475 (ACJEHQ_12475) dprA 2777158..2778243 (-) 1086 WP_010948297.1 DNA-processing protein DprA Machinery gene
  ACJEHQ_RS12480 (ACJEHQ_12480) - 2778240..2779277 (-) 1038 WP_010948296.1 LysM peptidoglycan-binding domain-containing protein -
  ACJEHQ_RS12485 (ACJEHQ_12485) def 2779371..2779883 (+) 513 WP_010948295.1 peptide deformylase -
  ACJEHQ_RS12490 (ACJEHQ_12490) fmt 2779880..2780824 (+) 945 WP_010948294.1 methionyl-tRNA formyltransferase -
  ACJEHQ_RS12495 (ACJEHQ_12495) rsmB 2780821..2782104 (+) 1284 WP_010948293.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACJEHQ_RS12500 (ACJEHQ_12500) - 2782101..2782850 (+) 750 WP_010948292.1 type II CAAX prenyl endopeptidase Rce1 family protein -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39545.75 Da        Isoelectric Point: 7.5076

>NTDB_id=1075355 ACJEHQ_RS12475 WP_010948297.1 2777158..2778243(-) (dprA) [Legionella pneumophila strain SPF651]
MNNLQPLLALNRMKKIGPRTVLKLQKRWPDLNLMFQLSNVDLEEAGLPSWLAQTIKNFDPGFIKTDLNWLSSSENHHILT
WDSPYYPALLKEIADPPFILYAKGELSAMTQPNLAIVGSRNASVTGNENARAFSREISRHGVSIVSGLALGIDAHAHLGC
LEGGGKTIAVLGTGIDCIYPRRHLKLAEQITENGLLLSEFPLKSPPIAGHFPLRNRIISGLSLCILVIEAAIKSGSLITA
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVADVLDELKIEHHQFTSNKPIFSLASGKENLVKFIGFETTTI
DQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIRCEYER

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1075355 ACJEHQ_RS12475 WP_010948297.1 2777158..2778243(-) (dprA) [Legionella pneumophila strain SPF651]
ATGAATAATCTGCAACCCCTCCTCGCCTTAAACAGGATGAAAAAAATTGGCCCCCGAACCGTATTAAAACTGCAAAAAAG
ATGGCCTGATTTAAACCTTATGTTCCAACTGTCAAATGTTGATCTGGAAGAAGCGGGCTTGCCATCCTGGTTGGCACAAA
CCATAAAAAATTTTGATCCGGGCTTTATAAAAACTGATTTGAACTGGTTAAGTTCATCAGAAAATCATCATATTTTAACT
TGGGACTCCCCCTATTATCCCGCATTGCTCAAAGAAATAGCCGATCCTCCCTTCATTTTATACGCTAAAGGTGAGCTGTC
CGCCATGACACAACCCAACCTGGCTATTGTTGGAAGTCGCAATGCTTCTGTAACAGGAAACGAGAATGCCCGCGCATTCT
CCAGGGAAATTTCCAGGCATGGGGTAAGCATAGTGAGTGGTTTAGCTTTGGGAATTGATGCTCATGCTCATTTAGGCTGT
CTGGAAGGAGGCGGCAAAACGATAGCGGTCTTAGGTACCGGAATTGATTGTATCTATCCGCGCCGGCATTTAAAATTAGC
TGAGCAAATTACAGAGAATGGTTTATTATTAAGCGAATTTCCTTTAAAAAGTCCACCAATTGCTGGACATTTTCCACTCA
GAAATCGTATAATAAGCGGTCTATCATTATGCATTTTGGTTATCGAGGCAGCAATTAAAAGCGGTTCTTTAATTACAGCA
AGAATGGCTCTGGAACAAAACAGAGATGTATTGGCTATTCCCGGATCAATTCATAACCCGTTAGCCAGGGGCTGCCACTA
CTTATTGCAACAGGGTGCGAAATTAGTAACTTCAGTGGCTGATGTTCTTGATGAGCTAAAAATCGAGCACCATCAGTTCA
CTTCTAATAAACCAATTTTTTCCCTTGCCAGCGGTAAGGAAAACCTAGTAAAGTTCATTGGTTTTGAAACTACGACTATC
GATCAAATCATTGATCGTAGCGGATATGGCATGGAACAAGTCACGAGTGGACTGGCTGAACTAGAATTGAAAGGGGCTGT
GATGGCAGTGCCCGGTGGCTATATAAGGTGTGAATATGAAAGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

98.338

100

0.983

  dprA Vibrio cholerae strain A1552

42.781

100

0.443

  dprA Vibrio campbellii strain DS40M4

44.444

99.723

0.443

  dprA Glaesserella parasuis strain SC1401

38.933

100

0.404

  dprA Haemophilus influenzae Rd KW20

46.048

80.609

0.371


Multiple sequence alignment