Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJEIF_RS08600 Genome accession   NZ_CP174213
Coordinates   1914140..1914619 (+) Length   159 a.a.
NCBI ID   WP_015444870.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF657     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1909140..1919619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEIF_RS08580 (ACJEIF_08580) - 1910389..1911285 (-) 897 WP_015444869.1 hypothetical protein -
  ACJEIF_RS08585 (ACJEIF_08585) - 1911285..1911698 (-) 414 WP_010946108.1 acyl carrier protein -
  ACJEIF_RS08590 (ACJEIF_08590) fabL 1911769..1912527 (-) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  ACJEIF_RS08595 (ACJEIF_08595) - 1912689..1914056 (+) 1368 WP_010946106.1 MFS transporter -
  ACJEIF_RS08600 (ACJEIF_08600) ssb 1914140..1914619 (+) 480 WP_015444870.1 single-stranded DNA-binding protein Machinery gene
  ACJEIF_RS08605 (ACJEIF_08605) rplQ 1914687..1915070 (-) 384 WP_010946104.1 50S ribosomal protein L17 -
  ACJEIF_RS08610 (ACJEIF_08610) - 1915089..1916081 (-) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  ACJEIF_RS08615 (ACJEIF_08615) rpsD 1916100..1916720 (-) 621 WP_010946102.1 30S ribosomal protein S4 -
  ACJEIF_RS08620 (ACJEIF_08620) rpsK 1916737..1917135 (-) 399 WP_010946101.1 30S ribosomal protein S11 -
  ACJEIF_RS08625 (ACJEIF_08625) rpsM 1917159..1917515 (-) 357 WP_010946100.1 30S ribosomal protein S13 -
  ACJEIF_RS08630 (ACJEIF_08630) rpmJ 1917593..1917706 (-) 114 WP_010946099.1 50S ribosomal protein L36 -
  ACJEIF_RS08635 (ACJEIF_08635) secY 1917723..1919051 (-) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  ACJEIF_RS08640 (ACJEIF_08640) rplO 1919054..1919488 (-) 435 WP_010946097.1 50S ribosomal protein L15 -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17643.40 Da        Isoelectric Point: 4.6616

>NTDB_id=1075180 ACJEIF_RS08600 WP_015444870.1 1914140..1914619(+) (ssb) [Legionella pneumophila strain SPF657]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1075180 ACJEIF_RS08600 WP_015444870.1 1914140..1914619(+) (ssb) [Legionella pneumophila strain SPF657]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACTCCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment