Detailed information NTG0107489

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: RGQ30_RS14015
• Genome accession: NZ_AP028947
• Coordinates: 3084579..3085091 (-)
• Length: 170 a.a.
• NCBI ID: WP_130557627.1
• Uniprot ID: -
• Organism: Limnobacter thiooxidans strain CS-K2
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3063891..3084374	3084579..3085091	flank	205

Gene organization within MGE regions

Location: 3063891..3085091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGQ30_RS13950 (RGQ30_27610)	-	3063891..3067751 (-)	3861	WP_130557641.1	CHAT domain-containing protein	-
RGQ30_RS13955 (RGQ30_27620)	-	3067857..3069371 (-)	1515	WP_130557640.1	hypothetical protein	-
RGQ30_RS13960 (RGQ30_27630)	-	3069565..3069999 (-)	435	WP_130557639.1	hypothetical protein	-
RGQ30_RS13965	-	3069996..3071999 (-)	2004	WP_130557638.1	integrase	-
RGQ30_RS13970	-	3071996..3073534 (-)	1539	WP_130557637.1	site-specific integrase	-
RGQ30_RS13975 (RGQ30_27660)	-	3073512..3074534 (-)	1023	WP_338284525.1	site-specific integrase	-
RGQ30_RS13980 (RGQ30_27680)	-	3075134..3075319 (+)	186	WP_130557635.1	hypothetical protein	-
RGQ30_RS13985 (RGQ30_27690)	-	3075369..3077321 (+)	1953	WP_130557634.1	type I restriction-modification system subunit M	-
RGQ30_RS13990 (RGQ30_27700)	-	3077318..3078667 (+)	1350	WP_130557633.1	restriction endonuclease subunit S	-
RGQ30_RS13995 (RGQ30_27710)	-	3078664..3079911 (+)	1248	WP_130557632.1	DUF6161 domain-containing protein	-
RGQ30_RS14000 (RGQ30_27720)	-	3079951..3083037 (+)	3087	WP_130557631.1	type I restriction endonuclease subunit R	-
RGQ30_RS14005 (RGQ30_27730)	-	3083048..3083461 (-)	414	WP_130557630.1	hypothetical protein	-
RGQ30_RS14010	-	3083479..3083997 (-)	519	WP_130557629.1	hypothetical protein	-
RGQ30_RS16155 (RGQ30_27740)	-	3084132..3084374 (+)	243	WP_130557628.1	helix-turn-helix domain-containing protein	-
RGQ30_RS14015 (RGQ30_27750)	ssb	3084579..3085091 (-)	513	WP_130557627.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 170 a.a.
• Molecular weight: 18036.92 Da
• Isoelectric Point: 5.3008

>NTDB_id=107489 RGQ30_RS14015 WP_130557627.1 3084579..3085091(-) (ssb) [Limnobacter thiooxidans strain CS-K2]
MASVNKVILVGNLGKDPDVRYLPDGGAVVNLALATSSNWKDKNTGEKREETEWHRVVIYGRLAEIAGEYCKKGRSVYIEG
RLKTRKWQDQSGVDKYTTEIIADQMQLLGGRDGGGGGSSMGGGDDFDQSPAPSRSSGGNSGGGSSMRSSAPAPQRSAPQS
VADLDDDIPF

Nucleotide

• Length: 513 bp

>NTDB_id=107489 RGQ30_RS14015 WP_130557627.1 3084579..3085091(-) (ssb) [Limnobacter thiooxidans strain CS-K2]
ATGGCATCAGTAAACAAGGTCATTCTGGTTGGTAATTTGGGCAAAGACCCCGATGTGCGTTATTTGCCCGACGGTGGCGC
AGTGGTTAACCTGGCGTTGGCCACATCCAGCAACTGGAAAGACAAAAACACAGGCGAAAAGCGCGAAGAAACCGAATGGC
ACCGCGTGGTTATTTACGGTCGTTTGGCTGAAATCGCGGGCGAGTATTGCAAGAAAGGCCGTTCGGTTTACATTGAAGGG
CGCTTGAAAACACGCAAGTGGCAGGACCAGTCGGGTGTGGACAAGTACACCACTGAAATTATTGCCGACCAAATGCAATT
GCTCGGCGGCCGTGATGGTGGCGGTGGTGGTTCATCCATGGGCGGTGGTGATGATTTCGATCAGTCGCCCGCACCAAGCC
GCAGTTCAGGTGGCAATTCTGGTGGCGGCAGCAGCATGCGCTCATCGGCGCCTGCGCCCCAACGTTCAGCGCCGCAAAGC
GTTGCTGATCTGGATGACGACATTCCCTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	52.432	100	0.571
ssb	Glaesserella parasuis strain SC1401	50.543	100	0.547
ssb	Neisseria meningitidis MC58	44.828	100	0.459
ssb	Neisseria gonorrhoeae MS11	44.828	100	0.459