Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACI1SY_RS00700 Genome accession   NZ_CP174196
Coordinates   148612..149028 (+) Length   138 a.a.
NCBI ID   WP_019293010.1    Uniprot ID   -
Organism   Lactococcus petauri strain L9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143612..154028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI1SY_RS00675 (ACI1SY_00675) guaB 144442..145923 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  ACI1SY_RS00680 (ACI1SY_00680) rpsU 146049..146225 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  ACI1SY_RS00685 (ACI1SY_00685) comGA 146411..147355 (+) 945 WP_173816876.1 competence type IV pilus ATPase ComGA Machinery gene
  ACI1SY_RS00690 (ACI1SY_00690) comGB/cglB 147294..148313 (+) 1020 WP_256440196.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACI1SY_RS00695 (ACI1SY_00695) comYC 148332..148637 (+) 306 WP_040087209.1 competence type IV pilus major pilin ComGC Machinery gene
  ACI1SY_RS00700 (ACI1SY_00700) comGD 148612..149028 (+) 417 WP_019293010.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACI1SY_RS00705 (ACI1SY_00705) comGE 149060..149293 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  ACI1SY_RS00710 (ACI1SY_00710) comGF 149280..149714 (+) 435 WP_242526938.1 competence type IV pilus minor pilin ComGF -
  ACI1SY_RS00715 (ACI1SY_00715) - 149946..150791 (+) 846 WP_019336001.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  ACI1SY_RS00720 (ACI1SY_00720) - 150862..151746 (-) 885 WP_086582775.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15758.38 Da        Isoelectric Point: 9.9391

>NTDB_id=1074838 ACI1SY_RS00700 WP_019293010.1 148612..149028(+) (comGD) [Lactococcus petauri strain L9]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=1074838 ACI1SY_RS00700 WP_019293010.1 148612..149028(+) (comGD) [Lactococcus petauri strain L9]
ATGCAAAACGTAATGTACCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACCATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

41.085

93.478

0.384
  comGD/cglD Streptococcus pneumoniae TIGR4

40.31

93.478

0.377
  comGD/cglD Streptococcus mitis NCTC 12261

39.231

94.203

0.37
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362

Multiple sequence alignment