Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI65L_RS21470 Genome accession   NZ_CP174195
Coordinates   4772830..4773375 (+) Length   181 a.a.
NCBI ID   WP_010295128.1    Uniprot ID   A0AAP8X217
Organism   Pectobacterium carotovorum strain PCC27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4767830..4778375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI65L_RS21460 (ACI65L_004279) - 4769310..4769729 (-) 420 WP_111779150.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI65L_RS21465 (ACI65L_004280) uvrA 4769745..4772579 (-) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  ACI65L_RS21470 (ACI65L_004281) ssb 4772830..4773375 (+) 546 WP_010295128.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACI65L_RS21475 (ACI65L_004282) - 4773534..4774145 (-) 612 WP_010295131.1 hypothetical protein -
  ACI65L_RS21480 (ACI65L_004283) - 4774396..4774851 (+) 456 WP_039545686.1 N-acetyltransferase -
  ACI65L_RS21485 (ACI65L_004284) - 4775036..4775626 (+) 591 WP_201877999.1 hypothetical protein -
  ACI65L_RS21490 (ACI65L_004285) - 4775634..4776671 (-) 1038 WP_103198670.1 LacI family DNA-binding transcriptional regulator -
  ACI65L_RS21495 (ACI65L_004286) - 4776671..4777723 (-) 1053 WP_010295141.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19172.13 Da        Isoelectric Point: 5.2456

>NTDB_id=1074833 ACI65L_RS21470 WP_010295128.1 4772830..4773375(+) (ssb) [Pectobacterium carotovorum strain PCC27]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1074833 ACI65L_RS21470 WP_010295128.1 4772830..4773375(+) (ssb) [Pectobacterium carotovorum strain PCC27]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGAAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGGAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTGGTTGTTAACGTCGG
CGGCACCATGCAGATGTTAGGTGGACGCCAGGGTGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCAGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459

Multiple sequence alignment