Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI42A_RS07145 Genome accession   NZ_CP174192
Coordinates   1588794..1589336 (+) Length   180 a.a.
NCBI ID   WP_222548409.1    Uniprot ID   -
Organism   Asaia lannensis strain WLS1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1583794..1594336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI42A_RS07135 - 1584752..1585696 (-) 945 WP_222548407.1 glyoxylate/hydroxypyruvate reductase A -
  ACI42A_RS07140 uvrA 1585693..1588626 (-) 2934 WP_222548408.1 excinuclease ABC subunit UvrA -
  ACI42A_RS07145 ssb 1588794..1589336 (+) 543 WP_222548409.1 single-stranded DNA-binding protein Machinery gene
  ACI42A_RS07150 gyrA 1589454..1592258 (+) 2805 WP_406586837.1 DNA gyrase subunit A -
  ACI42A_RS07155 coaD 1592242..1592769 (+) 528 WP_222548411.1 pantetheine-phosphate adenylyltransferase -
  ACI42A_RS07160 - 1592815..1593288 (+) 474 WP_222548412.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19520.23 Da        Isoelectric Point: 5.9939

>NTDB_id=1074804 ACI42A_RS07145 WP_222548409.1 1588794..1589336(+) (ssb) [Asaia lannensis strain WLS1-1]
MAGSVNKVILVGNLGRDPETRNAQSGAKIVNLTVATSESWNDRASGERKERTEWHRVVIFNERLADVAERFLRKGRKVYV
EGQLQTRKWTDQSGQERYTTEIVLDRFRGELTLLDNNRDGESGGGTGGGYESGPSRSYGGGNAPARSSGGMSQSPSRNQS
GNNGGGWDAPGGDLDDEIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1074804 ACI42A_RS07145 WP_222548409.1 1588794..1589336(+) (ssb) [Asaia lannensis strain WLS1-1]
ATGGCAGGAAGTGTAAACAAAGTCATTCTGGTGGGAAATCTGGGCCGCGACCCGGAAACACGGAATGCCCAGTCCGGCGC
GAAGATCGTCAACCTGACCGTCGCCACATCCGAAAGCTGGAACGATCGCGCTTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCATCGTGTGGTGATCTTCAACGAGCGCCTGGCCGATGTGGCTGAGCGTTTCCTGCGTAAGGGCCGCAAGGTCTATGTC
GAGGGTCAGCTCCAGACACGCAAATGGACGGACCAGAGCGGTCAGGAACGCTATACGACCGAAATCGTCCTCGACCGTTT
CCGCGGCGAGCTCACCCTGCTCGACAACAACCGCGATGGCGAATCTGGCGGTGGCACGGGCGGCGGCTATGAAAGCGGCC
CATCACGTTCCTATGGCGGCGGCAATGCCCCTGCTCGCAGCAGTGGCGGCATGAGCCAGTCTCCCTCGCGCAATCAGAGT
GGCAATAACGGCGGTGGCTGGGATGCACCGGGCGGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.114

100

0.494
  ssb Vibrio cholerae strain A1552

47.753

98.889

0.472
  ssb Neisseria meningitidis MC58

41.53

100

0.422
  ssb Neisseria gonorrhoeae MS11

40.437

100

0.411

Multiple sequence alignment