Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACCO34_RS17980 Genome accession   NZ_CP174160
Coordinates   3541723..3542412 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SMT-24     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3536723..3547412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO34_RS17945 - 3536922..3537404 (-) 483 WP_024085863.1 flagellar protein FlgN -
  ACCO34_RS17950 flgM 3537419..3537685 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCO34_RS17955 - 3537755..3538174 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACCO34_RS17960 comFC 3538248..3538937 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  ACCO34_RS17965 - 3538943..3539227 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACCO34_RS17970 comFA 3539285..3540670 (-) 1386 WP_139889935.1 DEAD/DEAH box helicase Machinery gene
  ACCO34_RS17975 - 3540777..3541625 (-) 849 WP_139889934.1 DegV family protein -
  ACCO34_RS17980 degU 3541723..3542412 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCO34_RS17985 degS 3542489..3543652 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACCO34_RS17990 - 3543875..3544522 (+) 648 WP_003151384.1 YigZ family protein -
  ACCO34_RS17995 - 3544527..3545741 (+) 1215 WP_003151383.1 LCP family protein -
  ACCO34_RS18000 - 3545831..3546907 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1074785 ACCO34_RS17980 WP_003219701.1 3541723..3542412(-) (degU) [Bacillus velezensis strain SMT-24]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1074785 ACCO34_RS17980 WP_003219701.1 3541723..3542412(-) (degU) [Bacillus velezensis strain SMT-24]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment