Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACCO34_RS17970 Genome accession   NZ_CP174160
Coordinates   3539285..3540670 (-) Length   461 a.a.
NCBI ID   WP_139889935.1    Uniprot ID   -
Organism   Bacillus velezensis strain SMT-24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3534285..3545670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO34_RS17935 flgL 3534460..3535377 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACCO34_RS17940 flgK 3535389..3536906 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  ACCO34_RS17945 - 3536922..3537404 (-) 483 WP_024085863.1 flagellar protein FlgN -
  ACCO34_RS17950 flgM 3537419..3537685 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCO34_RS17955 - 3537755..3538174 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACCO34_RS17960 comFC 3538248..3538937 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  ACCO34_RS17965 - 3538943..3539227 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACCO34_RS17970 comFA 3539285..3540670 (-) 1386 WP_139889935.1 DEAD/DEAH box helicase Machinery gene
  ACCO34_RS17975 - 3540777..3541625 (-) 849 WP_139889934.1 DegV family protein -
  ACCO34_RS17980 degU 3541723..3542412 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCO34_RS17985 degS 3542489..3543652 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACCO34_RS17990 - 3543875..3544522 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52551.08 Da        Isoelectric Point: 10.2038

>NTDB_id=1074784 ACCO34_RS17970 WP_139889935.1 3539285..3540670(-) (comFA) [Bacillus velezensis strain SMT-24]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKAYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQVPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1074784 ACCO34_RS17970 WP_139889935.1 3539285..3540670(-) (comFA) [Bacillus velezensis strain SMT-24]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGCATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGTCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTGGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGATATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAAGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment