Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACCO34_RS17960 Genome accession   NZ_CP174160
Coordinates   3538248..3538937 (-) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus velezensis strain SMT-24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3533248..3543937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO34_RS17925 fliW 3533339..3533770 (-) 432 WP_063174505.1 flagellar assembly protein FliW -
  ACCO34_RS17930 - 3533800..3534369 (-) 570 WP_003151397.1 DUF6470 family protein -
  ACCO34_RS17935 flgL 3534460..3535377 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACCO34_RS17940 flgK 3535389..3536906 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  ACCO34_RS17945 - 3536922..3537404 (-) 483 WP_024085863.1 flagellar protein FlgN -
  ACCO34_RS17950 flgM 3537419..3537685 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCO34_RS17955 - 3537755..3538174 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACCO34_RS17960 comFC 3538248..3538937 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  ACCO34_RS17965 - 3538943..3539227 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACCO34_RS17970 comFA 3539285..3540670 (-) 1386 WP_139889935.1 DEAD/DEAH box helicase Machinery gene
  ACCO34_RS17975 - 3540777..3541625 (-) 849 WP_139889934.1 DegV family protein -
  ACCO34_RS17980 degU 3541723..3542412 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCO34_RS17985 degS 3542489..3543652 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=1074783 ACCO34_RS17960 WP_197080391.1 3538248..3538937(-) (comFC) [Bacillus velezensis strain SMT-24]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1074783 ACCO34_RS17960 WP_197080391.1 3538248..3538937(-) (comFC) [Bacillus velezensis strain SMT-24]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCTCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment