Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACCH06_RS15900 Genome accession   NZ_CP174157
Coordinates   3184759..3185400 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179759..3190400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS15865 - 3180952..3181383 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  ACCH06_RS15870 - 3181383..3181724 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  ACCH06_RS15875 - 3181717..3183198 (+) 1482 WP_406589205.1 Na+/H+ antiporter subunit D -
  ACCH06_RS15880 - 3183204..3183680 (+) 477 WP_094232698.1 Na+/H+ antiporter subunit E -
  ACCH06_RS15885 - 3183680..3183964 (+) 285 WP_094232699.1 Na(+)/H(+) antiporter subunit F1 -
  ACCH06_RS15890 mnhG 3183948..3184322 (+) 375 WP_061570550.1 monovalent cation/H(+) antiporter subunit G -
  ACCH06_RS15895 - 3184361..3184741 (-) 381 WP_199679676.1 hotdog fold thioesterase -
  ACCH06_RS15900 comA 3184759..3185400 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  ACCH06_RS15905 comP 3185481..3187787 (-) 2307 WP_406589206.1 two-component system sensor histidine kinase ComP Regulator
  ACCH06_RS15910 comX 3187801..3187968 (-) 168 WP_106033957.1 competence pheromone ComX Regulator
  ACCH06_RS15915 comQ 3187952..3188854 (-) 903 WP_106034023.1 polyprenyl synthetase family protein Regulator
  ACCH06_RS15920 degQ 3189039..3189182 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  ACCH06_RS15925 - 3189642..3190001 (+) 360 WP_343310885.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=1074699 ACCH06_RS15900 WP_003327154.1 3184759..3185400(-) (comA) [Bacillus atrophaeus strain SHZ-24]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1074699 ACCH06_RS15900 WP_003327154.1 3184759..3185400(-) (comA) [Bacillus atrophaeus strain SHZ-24]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCGGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGTCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAACGTCGGTTCCCGGACGGAAGCGGTACTGATTGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901

Multiple sequence alignment