Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACJED3_RS21075 Genome accession   NZ_CP174155
Coordinates   3961296..3961727 (+) Length   143 a.a.
NCBI ID   WP_014480256.1    Uniprot ID   A0A0D1KRY1
Organism   Bacillus subtilis strain G01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3956296..3966727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS21050 corA 3957538..3958491 (+) 954 WP_014480260.1 magnesium transporter CorA -
  ACJED3_RS21055 - 3958493..3958690 (+) 198 WP_014480259.1 CBS domain-containing protein -
  ACJED3_RS21060 comGA 3958902..3959972 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ACJED3_RS21065 comGB 3959959..3960996 (+) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  ACJED3_RS21070 comGC 3961010..3961306 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ACJED3_RS21075 comGD 3961296..3961727 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  ACJED3_RS21080 comGE 3961711..3962058 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  ACJED3_RS21085 comGF 3962084..3962467 (+) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  ACJED3_RS21090 comGG 3962468..3962842 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  ACJED3_RS21095 spoIITA 3962913..3963092 (+) 180 WP_014480252.1 YqzE family protein -
  ACJED3_RS21100 yqzG 3963134..3963460 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACJED3_RS21105 tapA 3963732..3964493 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  ACJED3_RS21110 sipW 3964477..3965049 (+) 573 WP_003230181.1 signal peptidase I SipW -
  ACJED3_RS21115 tasA 3965113..3965898 (+) 786 WP_014480250.1 biofilm matrix protein TasA -
  ACJED3_RS21120 sinR 3965991..3966326 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACJED3_RS21125 sinI 3966360..3966533 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16091.75 Da        Isoelectric Point: 10.1947

>NTDB_id=1074629 ACJED3_RS21075 WP_014480256.1 3961296..3961727(+) (comGD) [Bacillus subtilis strain G01]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1074629 ACJED3_RS21075 WP_014480256.1 3961296..3961727(+) (comGD) [Bacillus subtilis strain G01]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

98.601

100

0.986

Multiple sequence alignment