Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACIPCF_RS09730 Genome accession   NZ_CP174138
Coordinates   1986152..1986667 (+) Length   171 a.a.
NCBI ID   WP_045999445.1    Uniprot ID   A0A5C4RBW8
Organism   Paracoccus marcusii strain LL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1981152..1991667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIPCF_RS09705 (ACIPCF_09705) - 1982734..1982988 (+) 255 WP_408592262.1 hypothetical protein -
  ACIPCF_RS09710 (ACIPCF_09710) - 1982988..1983389 (+) 402 WP_339817336.1 MAPEG family protein -
  ACIPCF_RS09715 (ACIPCF_09715) lpdA 1983452..1984840 (+) 1389 WP_408592263.1 dihydrolipoyl dehydrogenase -
  ACIPCF_RS09720 (ACIPCF_09720) - 1984833..1985354 (+) 522 WP_408592264.1 transglycosylase SLT domain-containing protein -
  ACIPCF_RS09725 (ACIPCF_09725) - 1985358..1985978 (-) 621 WP_045999444.1 lytic transglycosylase domain-containing protein -
  ACIPCF_RS09730 (ACIPCF_09730) ssb 1986152..1986667 (+) 516 WP_045999445.1 single-stranded DNA-binding protein Machinery gene
  ACIPCF_RS09735 (ACIPCF_09735) - 1986895..1987941 (+) 1047 WP_408592265.1 Leu/Phe/Val dehydrogenase -
  ACIPCF_RS09740 (ACIPCF_09740) aroB 1988018..1989124 (-) 1107 WP_408592266.1 3-dehydroquinate synthase -
  ACIPCF_RS09745 (ACIPCF_09745) - 1989121..1989672 (-) 552 WP_240542382.1 shikimate kinase -
  ACIPCF_RS09750 (ACIPCF_09750) - 1989799..1989963 (+) 165 WP_187427360.1 hypothetical protein -
  ACIPCF_RS09755 (ACIPCF_09755) - 1989956..1991416 (+) 1461 WP_408592267.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17912.60 Da        Isoelectric Point: 5.9567

>NTDB_id=1074533 ACIPCF_RS09730 WP_045999445.1 1986152..1986667(+) (ssb) [Paracoccus marcusii strain LL1]
MAGSVNKVILVGNLGRDPEIRSFQNGGKVANLRIATSENWKDRTTGERKERTEWHTVAIFNEGLVGVVERYLKKGSKVYV
EGQLETRKWQDQSGQDRYSTEIVLRGIGGTLTMLDGASGGGGGMGGGGMGGGGRDSGGYDDYNQGGGSSSSRGGGGGQGG
GRADYDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1074533 ACIPCF_RS09730 WP_045999445.1 1986152..1986667(+) (ssb) [Paracoccus marcusii strain LL1]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGCCGCGACCCGGAAATCCGCAGCTTTCAGAACGGCGG
CAAGGTTGCGAACCTGCGCATCGCCACCTCCGAGAACTGGAAGGACCGCACCACCGGAGAGCGCAAGGAGCGCACCGAGT
GGCACACCGTCGCCATCTTCAACGAGGGCCTGGTGGGCGTCGTCGAACGCTATCTCAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAGACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACCGCTATTCGACCGAGATCGTCCTGCGCGGCAT
CGGCGGCACGCTGACCATGCTGGACGGCGCCAGCGGCGGTGGCGGCGGCATGGGTGGTGGCGGCATGGGCGGCGGTGGTC
GCGACAGCGGCGGCTATGACGACTATAACCAGGGCGGCGGATCGTCGTCGTCGCGCGGCGGCGGCGGCGGCCAGGGCGGC
GGACGCGCCGATTACGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C4RBW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.872

100

0.526
  ssb Vibrio cholerae strain A1552

49.133

100

0.497
  ssb Neisseria meningitidis MC58

37.569

100

0.398
  ssb Neisseria gonorrhoeae MS11

37.017

100

0.392

Multiple sequence alignment