Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AABA74_RS12095 Genome accession   NZ_AP028932
Coordinates   2491023..2491358 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain RB.IBE29     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2486023..2496358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA74_RS12075 (RBIBE_23230) gcvT 2486634..2487734 (-) 1101 WP_338260609.1 glycine cleavage system aminomethyltransferase GcvT -
  AABA74_RS12080 (RBIBE_23240) - 2488157..2489827 (+) 1671 WP_058906183.1 SNF2-related protein -
  AABA74_RS12085 (RBIBE_23250) - 2489845..2490639 (+) 795 WP_014305407.1 YqhG family protein -
  AABA74_RS12090 (RBIBE_23260) sinI 2490816..2490989 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  AABA74_RS12095 (RBIBE_23270) sinR 2491023..2491358 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AABA74_RS12100 (RBIBE_23280) - 2491406..2492191 (-) 786 WP_003153102.1 TasA family protein -
  AABA74_RS12105 (RBIBE_23290) - 2492255..2492839 (-) 585 WP_046559873.1 signal peptidase I -
  AABA74_RS12110 (RBIBE_23300) tapA 2492811..2493482 (-) 672 WP_046559874.1 amyloid fiber anchoring/assembly protein TapA -
  AABA74_RS12115 (RBIBE_23310) - 2493741..2494070 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  AABA74_RS12120 (RBIBE_23320) - 2494110..2494289 (-) 180 WP_003153093.1 YqzE family protein -
  AABA74_RS12125 (RBIBE_23330) comGG 2494346..2494723 (-) 378 WP_046559875.1 competence type IV pilus minor pilin ComGG Machinery gene
  AABA74_RS12130 (RBIBE_23340) comGF 2494724..2495119 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  AABA74_RS12135 (RBIBE_23350) comGE 2495133..2495447 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  AABA74_RS12140 (RBIBE_23360) comGD 2495431..2495868 (-) 438 WP_044053464.1 competence type IV pilus minor pilin ComGD Machinery gene
  AABA74_RS12145 (RBIBE_23370) comGC 2495858..2496166 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=107425 AABA74_RS12095 WP_003153104.1 2491023..2491358(+) (sinR) [Bacillus velezensis strain RB.IBE29]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=107425 AABA74_RS12095 WP_003153104.1 2491023..2491358(+) (sinR) [Bacillus velezensis strain RB.IBE29]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment