Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AABA74_RS12145 Genome accession   NZ_AP028932
Coordinates   2495858..2496166 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain RB.IBE29     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2490858..2501166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA74_RS12095 (RBIBE_23270) sinR 2491023..2491358 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AABA74_RS12100 (RBIBE_23280) - 2491406..2492191 (-) 786 WP_003153102.1 TasA family protein -
  AABA74_RS12105 (RBIBE_23290) - 2492255..2492839 (-) 585 WP_046559873.1 signal peptidase I -
  AABA74_RS12110 (RBIBE_23300) tapA 2492811..2493482 (-) 672 WP_046559874.1 amyloid fiber anchoring/assembly protein TapA -
  AABA74_RS12115 (RBIBE_23310) - 2493741..2494070 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  AABA74_RS12120 (RBIBE_23320) - 2494110..2494289 (-) 180 WP_003153093.1 YqzE family protein -
  AABA74_RS12125 (RBIBE_23330) comGG 2494346..2494723 (-) 378 WP_046559875.1 competence type IV pilus minor pilin ComGG Machinery gene
  AABA74_RS12130 (RBIBE_23340) comGF 2494724..2495119 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  AABA74_RS12135 (RBIBE_23350) comGE 2495133..2495447 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  AABA74_RS12140 (RBIBE_23360) comGD 2495431..2495868 (-) 438 WP_044053464.1 competence type IV pilus minor pilin ComGD Machinery gene
  AABA74_RS12145 (RBIBE_23370) comGC 2495858..2496166 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  AABA74_RS12150 (RBIBE_23380) comGB 2496171..2497208 (-) 1038 WP_014305414.1 competence type IV pilus assembly protein ComGB Machinery gene
  AABA74_RS12155 (RBIBE_23390) comGA 2497195..2498265 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  AABA74_RS12160 (RBIBE_23400) - 2498457..2499407 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  AABA74_RS12165 (RBIBE_23410) - 2499553..2500854 (+) 1302 WP_058906187.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=107429 AABA74_RS12145 WP_003153087.1 2495858..2496166(-) (comGC) [Bacillus velezensis strain RB.IBE29]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=107429 AABA74_RS12145 WP_003153087.1 2495858..2496166(-) (comGC) [Bacillus velezensis strain RB.IBE29]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACTATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGCAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment