Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI515_RS17780 Genome accession   NZ_CP173628
Coordinates   3915647..3916192 (+) Length   181 a.a.
NCBI ID   WP_103861803.1    Uniprot ID   -
Organism   Pectobacterium carotovorum strain M3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3910647..3921192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI515_RS17770 (ACI515_17765) - 3912133..3912552 (-) 420 WP_405078480.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI515_RS17775 (ACI515_17770) uvrA 3912568..3915402 (-) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  ACI515_RS17780 (ACI515_17775) ssb 3915647..3916192 (+) 546 WP_103861803.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACI515_RS17785 (ACI515_17780) - 3916350..3916961 (-) 612 WP_320706877.1 hypothetical protein -
  ACI515_RS17790 (ACI515_17785) - 3917197..3917652 (+) 456 WP_405078481.1 GNAT family N-acetyltransferase -
  ACI515_RS17795 (ACI515_17790) - 3917699..3918736 (-) 1038 WP_010295136.1 LacI family DNA-binding transcriptional regulator -
  ACI515_RS17800 (ACI515_17795) - 3918736..3919788 (-) 1053 WP_010295141.1 carbohydrate ABC transporter permease -
  ACI515_RS17805 (ACI515_17800) - 3919797..3920795 (-) 999 WP_010279314.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19145.11 Da        Isoelectric Point: 5.2456

>NTDB_id=1073375 ACI515_RS17780 WP_103861803.1 3915647..3916192(+) (ssb) [Pectobacterium carotovorum strain M3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGSAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1073375 ACI515_RS17780 WP_103861803.1 3915647..3916192(+) (ssb) [Pectobacterium carotovorum strain M3]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTTCTGTTCGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAGTGCAGGTGGCGGCCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCTGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.316

100

0.591
  ssb Neisseria gonorrhoeae MS11

46.369

98.895

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459

Multiple sequence alignment