Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI51X_RS03595 Genome accession   NZ_CP173623
Coordinates   822754..823299 (-) Length   181 a.a.
NCBI ID   WP_103942327.1    Uniprot ID   -
Organism   Pectobacterium versatile strain M10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 817754..828299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI51X_RS03585 (ACI51X_03585) - 819237..819518 (-) 282 WP_103861804.1 hypothetical protein -
  ACI51X_RS03590 (ACI51X_03590) - 820259..822139 (-) 1881 WP_180746099.1 reverse transcriptase domain-containing protein -
  ACI51X_RS03595 (ACI51X_03595) ssb 822754..823299 (-) 546 WP_103942327.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACI51X_RS03600 (ACI51X_03600) uvrA 823550..826384 (+) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  ACI51X_RS03605 (ACI51X_03605) - 826401..826820 (+) 420 WP_103861802.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI51X_RS03610 (ACI51X_03610) cas6f 827616..828170 (-) 555 WP_405081491.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19175.13 Da        Isoelectric Point: 5.2456

>NTDB_id=1073255 ACI51X_RS03595 WP_103942327.1 822754..823299(-) (ssb) [Pectobacterium versatile strain M10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQSGGAPAGGGSAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1073255 ACI51X_RS03595 WP_103942327.1 822754..823299(-) (ssb) [Pectobacterium versatile strain M10]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGAAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTAGTTGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGAGCGGCGGCGCACCAGCAGGCGGTGGCAGTGCAGGTGGCGGCCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCGGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.597
  ssb Neisseria meningitidis MC58

46.927

98.895

0.464
  ssb Neisseria gonorrhoeae MS11

46.927

98.895

0.464

Multiple sequence alignment