Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI512_RS31845 Genome accession   NZ_CP173614
Coordinates   6887440..6887952 (-) Length   170 a.a.
NCBI ID   WP_236378411.1    Uniprot ID   -
Organism   Pseudomonas petroselini strain M14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6882440..6892952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI512_RS31820 (ACI512_31820) - 6882725..6883834 (-) 1110 WP_236378406.1 DUF3182 family protein -
  ACI512_RS31825 (ACI512_31825) - 6884006..6884965 (-) 960 WP_236378408.1 GlxA family transcriptional regulator -
  ACI512_RS31830 (ACI512_31830) - 6885062..6885622 (+) 561 WP_231808508.1 cysteine hydrolase family protein -
  ACI512_RS31835 (ACI512_31835) tam 6885644..6886405 (-) 762 WP_231808507.1 trans-aconitate 2-methyltransferase -
  ACI512_RS31840 (ACI512_31840) - 6886512..6887270 (-) 759 WP_236378410.1 DUF4365 domain-containing protein -
  ACI512_RS31845 (ACI512_31845) ssb 6887440..6887952 (-) 513 WP_236378411.1 single-stranded DNA-binding protein Machinery gene
  ACI512_RS31850 (ACI512_31850) - 6887962..6889356 (-) 1395 WP_064052234.1 MFS transporter -
  ACI512_RS31855 (ACI512_31855) uvrA 6889535..6892369 (+) 2835 WP_015886132.1 excinuclease ABC subunit UvrA -
  ACI512_RS31860 (ACI512_31860) bfr 6892435..6892899 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18883.99 Da        Isoelectric Point: 5.9455

>NTDB_id=1073198 ACI512_RS31845 WP_236378411.1 6887440..6887952(-) (ssb) [Pseudomonas petroselini strain M14]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGTNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAPD
FDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1073198 ACI512_RS31845 WP_236378411.1 6887440..6887952(-) (ssb) [Pseudomonas petroselini strain M14]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGAGCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCACCAACTCGGCACCGCGTCCACAGCAGT
CGCGTCCACAGCCAAGCCAGCAGCCACAACGTGAGTCGCGTCCAGCGCCACAACAGGCCGCTCCGCAACCGGCTCCGGAT
TTCGACAGTTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

45.312

100

0.512
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.506
  ssb Neisseria meningitidis MC58

46.591

100

0.482

Multiple sequence alignment